Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgaggcttgtccgtcacttcctgaatcagacagtggtttcgcgacgacggttgaccaccgccttcccctccacccgcgcgccctgaccccttctcccgttcaagcactccctcccatccccttcgccctctttcccccctcgacccctacgcccctcccactccctctacctttccaaagGGTGTTCCGGCTAAGCCTGCTGGGCTTCACCGCCTACGTCACCGCCGACCCGGAGGCGCTCCGCCCGCTACTGGCGGACGAGGGCGGCCACTTCACCATC

Basic information

species Chlamydomonas reinhardtii
transcript EDP06333
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|8576687|gb|BE129324.1|BE129324
EST:     TCGGCAGGTTCAAGCGCTATGGAAG                         GGTGTTCCGGCTAAGCCTGCTGGGCTTCACCGCCTACGTCACCGCCGACCC
genomic: TCGGCAGGTTCAAGCGCTATGGAAGgtgaggcttg ... ctttccaaagGGTGTTCCGGCTAAGCCTGCTGGGCTTCACCGCCTACGTCACCGCCGACCC
EST: gi|15367892|gb|BI527318.1|BI527318
EST:     TCGGCAGGTTCAAGCGCTATGGAAG                         GGTGTTCCGGCTAAGCCTGCTGGGCTTCACCGCCTACGTCACCGCCGACCC
genomic: TCGGCAGGTTCAAGCGCTATGGAAGgtgaggcttg ... ctttccaaagGGTGTTCCGGCTAAGCCTGCTGGGCTTCACCGCCTACGTCACCGCCGACCC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ccctctttcccccctcgacccctacgcccctcccactccctctacctttccaaagGGTGTTCCGGCTAAGCCTGCTGGGCTTCACCGCCTACGTCACCGCCGACCCGGAGGCGCTCCGCCCGCTACTGGCGGACGAGGGCGGCCACTTCACCATC
                  cccctacgcccctccc  CT-rich tract