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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagtgcggacggcgggggctggggcagcgggaagttggacacctccgcgcacacttgctcacctacacgccgcaccgctgttccgcgcgccgcagGCACCTACCTGTTGTACGTGGTCAGCGGCACCGTGGACATCCTGGTCAAGTGGGTCACCATGCCGCGCCGCACCAACAGCGCGCAGGTGGCGCAGGGGCA

Basic information

species Chlamydomonas reinhardtii
transcript EDP06487
intron # 10
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|15697288|gb|BI721593.1|BI721593
EST:     CGAGCGCGTGTTCCAGGAGGGCGACATCATCATGCGCCAGGGAGACCAGG                         GCACCTACCTGTTGTACGTGGTCAGCGGCACCGTGGACATCCTGGTCAAGT
genomic: CGAGCGCGTGTTCCAGGAGGGCGACATCATCATGCGCCAGGGAGACCAGGgtgagtgcgg ... cgcgccgcagGCACCTACCTGTTGTACGTGGTCAGCGGCACCGTGGACATCCTGGTCAAGT
EST: gi|23367451|gb|BU655269.1|BU655269
EST:     CGAGCGCGTGTTCCAGGCTGGCGACATCATCATGCGCCAGGGAGACCAGG                         GCACCTACCTGTTGTACGTGGTCAGCGGCACCGTGGACATCCTGGTCAAGT
genomic: CGAGCGCGTGTTCCAGGAGGGCGACATCATCATGCGCCAGGGAGACCAGGgtgagtgcgg ... cgcgccgcagGCACCTACCTGTTGTACGTGGTCAGCGGCACCGTGGACATCCTGGTCAAGT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

acctccgcgcacacttgctcacctacacgccgcaccgctgttccgcgcgccgcagGCACCTACCTGTTGTACGTGGTCAGCGGCACCGTGGACATCCTGGTCAAGTGGGTCACCATGCCGCGCCGCACCAACAGCGCGCAGGTGGCGCAGGGGCA
               tgctcac  putative branch site (score: 2)