1 5' 3' | 2 5' 3' |
...tcagtgtaaacgtggtacctgaacaccaccctccgctacattttacgttgaaccacgcaaccatgccctaaatgtctgcaaaaccattgcgcgcacacagGCCCCATGCACATCAAGGACCGCAAGTTGTGGCGCGCCCGGGCGGAGGCTCTGGCCAAGGAGAAGAAGCTCATCCGCGTGCAG
species | Chlamydomonas reinhardtii |
transcript | EDP06549 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: GGCAATCGACGAGTCGCAATTAGGGCCGCTGCCGGAGGTCCGCCACCAAG GCCCCATGCACATCAAGGACCGCAAGTTGTGGCGCGCCCGGGCGGAGGCTCEST: gi|10780591|gb|AV637271.1|AV637271
genomic: GGCAATCGACGAGTCGCAATTGGGGCCGCTGCCGGAGGTCCGCCACCAAGgtgcgggctg ... gcgcacacagGCCCCATGCACATCAAGGACCGCAAGTTGTGGCGCGCCCGGGCGGAGGCTC
EST: GGCAATCGACGAGTCGCAATTGGGGCCGCTGCCGGAGGTCCGCCACCAAG GCCCCATGCACATCAAGGACCGCAAGTAGTGGCGCGCCCGGGCGGAGGCTCEST: gi|14237032|gb|BG855848.1|BG855848
genomic: GGCAATCGACGAGTCGCAATTGGGGCCGCTGCCGGAGGTCCGCCACCAAGgtgcgggctg ... gcgcacacagGCCCCATGCACATCAAGGACCGCAAGTTGTGGCGCGCCCGGGCGGAGGCTC
EST: GGCAATCGACGAGTCGCAATTAGGGCCGCTGCCGGAGGTCCGCCACCAAG GCCCCATGCACATCAAGGACCGCAAGTTGTGGCGCGCCCGGGCGGAGGCTCEST: gi|6541570|gb|AV387354.1|AV387354
genomic: GGCAATCGACGAGTCGCAATTGGGGCCGCTGCCGGAGGTCCGCCACCAAGgtgcgggctg ... gcgcacacagGCCCCATGCACATCAAGGACCGCAAGTTGTGGCGCGCCCGGGCGGAGGCTC
EST: GGCAATCGACGAGTCGCAATTGGGGCCGCTGCCGGAGGTCCGCCACCAAG GCCCCATGCACATCAAGGACCGCAAGTTGTGGCGCGCCCGGGCGGAGGCTC
genomic: GGCAATCGACGAGTCGCAATTGGGGCCGCTGCCGGAGGTCCGCCACCAAGgtgcgggctg ... gcgcacacagGCCCCATGCACATCAAGGACCGCAAGTTGTGGCGCGCCCGGGCGGAGGCTC
cgttgaaccacgcaaccatgccctaaatgtctgcaaaaccattgcgcgcacacagGCCCCATGCACATCAAGGACCGCAAGTTGTGGCGCGCCCGGGCGGAGGCTCTGGCCAAGGAGAAGAAGCTCATCCGCGTGCAG
ccctaaa putative branch site (score: 3)
taaatgt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tcagtgtaaacgtggtacctgaacaccaccctccgctacattttacgttgaaccacgcaaccatgccctaaatgtctgcaaaaccattgcgcgcacacagGCCCCATGCACATCAAGGACCGCAAGTTGTGGCGCGCCCGGGCGGAGGCTCTGGCCAAGGAGAAGAAGCTCATCCGCGTGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA
- agtgtaa
- - - - - - - - - - - acaccac
- - - - - - - - - - - - - - - - - - - - -tttacgt
- - - - - - - - - - - - - - - - - - - - - - - - - - ccacgca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -catgccc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - taaatgt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aaaacca