1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...taagccgtgtatctgctcttcttgctaaatgggtcggcccgggacccgctcgcgactgggatggcctgagcgtttcacgctcgcgcgcttgttctcacagGCTGAGCTGAAGGTCGGCGAGAAGCTGGAGGACTACCCCAACTACTACAA
species | Chlamydomonas reinhardtii |
transcript | EDP06371 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: CCTTCCGCGCTGCTCCCCGCGTTTCTCGCACCCCTGTGGTCGTCGTGCGC GCTGAGCTGAAGGTCGGCGAGAAGCTGGAGGACTACCCCAACTACTACAAEST: gi|10793801|gb|AV631167.1|AV631167
genomic: CCTTCCGCGCTGCTCCCCGCGTTTCTCGCACCCCTGTGGTCGTCGTGCGCgtaagtcagc ... gttctcacagGCTGAGCTGAAGGTCGGCGAGAAGCTGGAGGACTACCCCAACTACTACAA
EST: CCTTCCGCGCTGCTCCCCGCGTTTCTCGCACCCCTGTGGTCGTCGTGCGC GCTGAGCTGAAGGTCGGCGAGAAGCTGGAGGACTACCCCAACTACTACAAEST: gi|15700761|gb|BI725066.1|BI725066
genomic: CCTTCCGCGCTGCTCCCCGCGTTTCTCGCACCCCTGTGGTCGTCGTGCGCgtaagtcagc ... gttctcacagGCTGAGCTGAAGGTCGGCGAGAAGCTGGAGGACTACCCCAACTACTACAA
EST: CCTTCCGCGCTGCTCCCCGCGTTTCTCGCACCCCTGTGGTCGTCGTGCGC GCTGAGCTGAAGGTCGGCGAGAAGCTGGAGGACTACCCCAACTACTACAAEST: gi|15371918|gb|BI531344.1|BI531344
genomic: CCTTCCGCGCTGCTCCCCGCGTTTCTCGCACCCCTGTGGTCGTCGTGCGCgtaagtcagc ... gttctcacagGCTGAGCTGAAGGTCGGCGAGAAGCTGGAGGACTACCCCAACTACTACAA
EST: CCTTCCGCGCTGCTCCCCGCGTTTCTCGCACCCCTGTGGTCGTCGTGCGC GCTGAGCTGAAGGTCGGCGAGAAGCTGGAGGACTACCCCAACTACTACAAEST: gi|16432184|gb|BI997410.1|BI997410
genomic: CCTTCCGCGCTGCTCCCCGCGTTTCTCGCACCCCTGTGGTCGTCGTGCGCgtaagtcagc ... gttctcacagGCTGAGCTGAAGGTCGGCGAGAAGCTGGAGGACTACCCCAACTACTACAA
EST: CCTTCCGCGCTGCTCCCCGCGTTTCTCGCACCCCTGTGGTCGTCGTGCGC GCTGAGCTGAAGGTCGGCGAGAAGCTGGAGGACTACCCCAACTACTACAA
genomic: CCTTCCGCGCTGCTCCCCGCGTTTCTCGCACCCCTGTGGTCGTCGTGCGCgtaagtcagc ... gttctcacagGCTGAGCTGAAGGTCGGCGAGAAGCTGGAGGACTACCCCAACTACTACAA
ccgctcgcgactgggatggcctgagcgtttcacgctcgcgcgcttgttctcacagGCTGAGCTGAAGGTCGGCGAGAAGCTGGAGGACTACCCCAACTACTACAA
cttgttctc CT-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| taagccgtgtatctgctcttcttgctaaatgggtcggcccgggacccgctcgcgactgggatggcctgagcgtttcacgctcgcgcgcttgttctcacagGCTGAGCTGAAGGTCGGCGAGAAGCTGGAGGACTACCCCAACTACTACAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - -cgtgtat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tcacgct