1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...cggtccatctgggtcagctgccctgttgcccccccccccacacacacacacacacacaaagcccccgtccccccttccctcccctccctttttcctgcagACGACAAGGCGGACGTGGAACGGCTAGCCTCGACGCTGGAGGACCTGAACCCCACCGCCAAGCCGCTGGCCGCGCCCGAGCTGCTGAGCGGCAAGTGGCG
species | Chlamydomonas reinhardtii |
transcript | EDP04512 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: GCTTCTAGACCGCATTGCGACGCTGGACCGCGGCGCTTCTGCTACAGCAG ACGACAAGGCGGACGTGGAACGGCTAGCCTCGACGCTGGAGGACCTGAACCEST: gi|9210689|gb|BE337604.1|BE337604
genomic: GCTTCTAGACCGCATTGCGACGCTGGACCGCGGCGCTTCTGCTACAGCAGgtaggaatag ... tttcctgcagACGACAAGGCGGACGTGGAACGGCTAGCCTCGACGCTGGAGGACCTGAACC
EST: GCTTCTAGACCGCATTGCGACGCTGGACCGCGGCGCTTCTGCTACAGCAG ACGACAAGGCGGACGTGGAACGGCTAGCCTCGACGCTGGAGGACCTGAACCEST: gi|15368374|gb|BI527800.1|BI527800
genomic: GCTTCTAGACCGCATTGCGACGCTGGACCGCGGCGCTTCTGCTACAGCAGgtaggaatag ... tttcctgcagACGACAAGGCGGACGTGGAACGGCTAGCCTCGACGCTGGAGGACCTGAACC
EST: GCTTCTAGACCGCATTGCGACGCTGGACCGCGGCGCTTCTGCTACAGCAG ACGACAAGGCGGACGTGGAACGGCTAGCCTCGACGCTGGAGGACCTGAACCEST: gi|22051660|gb|BQ809766.1|BQ809766
genomic: GCTTCTAGACCGCATTGCGACGCTGGACCGCGGCGCTTCTGCTACAGCAGgtaggaatag ... tttcctgcagACGACAAGGCGGACGTGGAACGGCTAGCCTCGACGCTGGAGGACCTGAACC
EST: GCTTCTAGACCGCATTGCGACGCTGGACCGCGGCGCTTCTGCTACAGCAG ACGACAAGGCGGACGTGGAACGGCTAGCCTCGACGCTGGAGGACCTGAACC
genomic: GCTTCTAGACCGCATTGCGACGCTGGACCGCGGCGCTTCTGCTACAGCAGgtaggaatag ... tttcctgcagACGACAAGGCGGACGTGGAACGGCTAGCCTCGACGCTGGAGGACCTGAACC
acacacacacacaaagcccccgtccccccttccctcccctccctttttcctgcagACGACAAGGCGGACGTGGAACGGCTAGCCTCGACGCTGGAGGACCTGAACCCCACCGCCAAGCCGCTGGCCGCGCCCGAGCTGCTGAGCGGCAAGTGGCG
cccccgtccccccttc CT-rich tract
ttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| cggtccatctgggtcagctgccctgttgcccccccccccacacacacacacacacacaaagcccccgtccccccttccctcccctccctttttcctgcagACGACAAGGCGGACGTGGAACGGCTAGCCTCGACGCTGGAGGACCTGAACCCCACCGCCAAGCCGCTGGCCGCGCCCGAGCTGCTGAGCGGCAAGTGGCG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - - - - - - - - - - - cccccac
- - - - - - - - - - - - - - - - - - - -acacaca