1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
...acagtgagaaaagttcccaggctagctgaatcagcgcgcctgggagcggttggcacctcgcgtgcgttaggaaaccctatcaccggcccacgttctgtagGTTTTCCTCAACTCGGTCACCAGGGGGTGTGGCGCGCGCATCGCTGCAAAGCTGGAGAGCTTTGAGCCCTGCTGCAG
species | Chlamydomonas reinhardtii |
transcript | EDP01088 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: ACGTCGGCATCCAGCCGGATGCAACACGCCTTGTGGGCAACACGCCGATG GTTTTCCTCAACTCGGTCACCAGGGGGTGTGGCGCGCGCATCGCTGCAAAGEST: gi|15373395|gb|BI532821.1|BI532821
genomic: ACGTCGGCATCCAGCCGGATGCAACACGCCTTGTGGGCAACACGCCGATGgtgcgtcgtt ... cgttctgtagGTTTTCCTCAACTCGGTCACCAGGGGGTGTGGCGCGCGCATCGCTGCAAAG
EST: ACGTCGGCATCCAGCCGGATGCAACACGCCTTGTGGGCAACACGCCGATG GTTTTCCTCAACTCGGTCACCAGGGGGTGTGGCGCGCGCATCGCTGCAAAGEST: gi|16437746|gb|BM002966.1|BM002966
genomic: ACGTCGGCATCCAGCCGGATGCAACACGCCTTGTGGGCAACACGCCGATGgtgcgtcgtt ... cgttctgtagGTTTTCCTCAACTCGGTCACCAGGGGGTGTGGCGCGCGCATCGCTGCAAAG
EST: ACGTCGGCATCCAGCCGGATGCAACACGCCTTGTGGGCAACACGCCGATG GTTTTCCTCAACTCGGTCACCAGGGGGTGTGGCGCGCGCATCGCTGCAAAGEST: gi|10785988|gb|AV642660.1|AV642660
genomic: ACGTCGGCATCCAGCCGGATGCAACACGCCTTGTGGGCAACACGCCGATGgtgcgtcgtt ... cgttctgtagGTTTTCCTCAACTCGGTCACCAGGGGGTGTGGCGCGCGCATCGCTGCAAAG
EST: ACGTCGGCATCCAGCCGGATGCAACACGCCTTGTGGGCAACACGCCGATG GTTTTCCTCAACTCGGT
genomic: ACGTCGGCATCCAGCCGGATGCAACACGCCTTGTGGGCAACACGCCGATGgtgcgtcgtt ... cgttctgtagGTTTTCCTCAACTCGGT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| acagtgagaaaagttcccaggctagctgaatcagcgcgcctgggagcggttggcacctcgcgtgcgttaggaaaccctatcaccggcccacgttctgtagGTTTTCCTCAACTCGGTCACCAGGGGGTGTGGCGCGCGCATCGCTGCAAAGCTGGAGAGCTTTGAGCCCTGCTGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG
acagtga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgcgtta