1 5' 3' | 2 5' 3' |
...agccaggcgtgcagccccgggtgcttgcggatagcggtactgactcccgtgttccgtagacggctaacccggttcctgcccccgcccgttgcctgcgcagGCGCAAGTGCAGCTGCAGCGGGCGGTGCGGCGTCAGGAGGAGCTGCACCGGCGTGAGGAGGCGCGAGCCGCGCG
species | Chlamydomonas reinhardtii |
transcript | EDP00957 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: TGGCGACGCTCGTGGAGCAAGTGCGGAAAGCCGAGCTCGAGCACAAGCTG GC--AAGTGCAGCTGCAGCGGGCGGTGCGGCGTAAGGAGGAGCTGAACCGGEST: gi|15694095|gb|BI718400.1|BI718400
genomic: TGGCGACGCTCGTGGAGCAAGTGCGGAAAGCCGAGCTCGAGCACAAGCTGgtgcgcgacg ... gcctgcgcagGCGCAAGTGCAGCTGCAGCGGGCGGTGCGGCGTCAGGAGGAGCTGCACCGG
EST: TGGCGACGCTCGTGGAGCAAGTGCGGAAAGCCGAGCTCGAGCACAAGCTG GCGCAAGTGCAGCTGCAGCGGGCGGTGCGGCGTCAGGAGGAGCTGCACCGGEST: gi|15700179|gb|BI724484.1|BI724484
genomic: TGGCGACGCTCGTGGAGCAAGTGCGGAAAGCCGAGCTCGAGCACAAGCTGgtgcgcgacg ... gcctgcgcagGCGCAAGTGCAGCTGCAGCGGGCGGTGCGGCGTCAGGAGGAGCTGCACCGG
EST: TGGCGACGCTCGTGGAGCAAGTGCGGAAAGCCGAGCTCGAGCACAAGCTG GCGCAAGTGCAGCTGCAGCGGGCGGTGCGGCGTCAGGAGGAGCTGCACCGG
genomic: TGGCGACGCTCGTGGAGCAAGTGCGGAAAGCCGAGCTCGAGCACAAGCTGgtgcgcgacg ... gcctgcgcagGCGCAAGTGCAGCTGCAGCGGGCGGTGCGGCGTCAGGAGGAGCTGCACCGG
cccgtgttccgtagacggctaacccggttcctgcccccgcccgttgcctgcgcagGCGCAAGTGCAGCTGCAGCGGGCGGTGCGGCGTCAGGAGGAGCTGCACCGGCGTGAGGAGGCGCGAGCCGCGCG
ggctaac putative branch site (score: 2)
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| agccaggcgtgcagccccgggtgcttgcggatagcggtactgactcccgtgttccgtagacggctaacccggttcctgcccccgcccgttgcctgcgcagGCGCAAGTGCAGCTGCAGCGGGCGGTGCGGCGTCAGGAGGAGCTGCACCGGCGTGAGGAGGCGCGAGCCGCGCG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - gtgcttg
- - - - - - - - - - - - - - - - - - - actgact