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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagaaaggaaccttaaacataaccaacctactactttcttctctttgttaaaactaacttagaacttatatatacggtttcagCTCACACCAGAACATGCTAAACTTCCATCAACATTGTCTGTATTCAGCAACTTTTTGCTTGGGGAAATTTTCTCTCAG

Basic information

species Arabidopsis thaliana
transcript AT4G12830.1
intron # 9
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|125101450|gb|EL156560.1|EL156560
EST:     CAAGAAACCGACCAGACAAGATCAAGAATCTCATACTCTTGAATCCTCCT                         A
genomic: CAAGAAACCGACCAGACAAGATCAAGAATCTCATACTCTTGAATCCTCCTgtaagaaagg ... acggtttcag-
EST: gi|125101450|gb|EL156560.1|EL156560
EST:     CAAGAAACCGACCAGACAAGATCAAGAATCTCATACTCTTGAATCCTCCT                         A
genomic: CAAGAAACCGACCAGACAAGATCAAGAATCTCATACTCTTGAATCCTCCTgtaagaaagg ... acggtttcag-
EST: gi|124958889|gb|EL033601.1|EL033601
EST:     ATACTCTTGAATCCTCCT                         CTCACACCAGAACATGCTAAACTTCCATCAACATTGTCTGTATTCAGCAAC
genomic: ATACTCTTGAATCCTCCTgtaagaaagg ... acggtttcagCTCACACCAGAACATGCTAAACTTCCATCAACATTGTCTGTATTCAGCAAC
EST: gi|124990983|gb|EL063252.1|EL063252
EST:     CAAGAAACCGACCAGACAAGATCAAGAATCTCATACTCTTGAATCCTCCT                         CTCACACCAGAACATGCTAAACTTCCATCAACATTGT
genomic: CAAGAAACCGACCAGACAAGATCAAGAATCTCATACTCTTGAATCCTCCTgtaagaaagg ... acggtttcagCTCACACCAGAACATGCTAAACTTCCATCAACATTGT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tactactttcttctctttgttaaaactaacttagaacttatatatacggtttcagCTCACACCAGAACATGCTAAACTTCCATCAACATTGTCTGTATTCAGCAACTTTTTGCTTGGGGAAATTTTCTCTCAG
                       aactaac  putative branch site (score: 1)
                   ttaaaactaacttaga  TA-rich tract