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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagtttctttaatctgacgatcttaaaaattcctctgtgaagttgtgtatgttcttgtcttgagctagcttagagctgttagctttaatgttttattgtctaaagctaaactacaaccaatctaatggttattttggaagggtctatgctgatgttactctcttttttcgttctggctaagcagGGCGATATATGGCTCCAGAGGTTTATAGGAATGAAGAGTATGATACAAAAGTAGATGTATTCTCTTTCGCTTTAATCTTACAAGAG

Basic information

species Arabidopsis thaliana
transcript AT3G58760.1
intron # 8
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT3G58760.1 (Arabidopsis thaliana), 3'ss of exon 8
lower sequence: GRMZM2G045366_T01 (Zea mays), 3'ss of exon 8
gtaagtttctttaatctgacgatcttaaaaattcctctgtgaagttgtgtatgttcttgtcttgagctagcttagagctgttagctttaatgttttattgtctaaagctaaactacaaccaatctaatggttattttggaagggtctatgctgatgttactctcttttttcgttctggctaagcagGGCGATATATGGCTCCAGAGGTTTATAGGAATGAAGAGTATGATACAAAAGTAGATGTATTCTCTTTCGCTTTAATCTTACAAGAG
                                                                            |    | |  || ||  |||     |||||  |   ||| |   |   | |   ||    |  |    | |   ||   ||  |         | |||      |  ||||   |||| |||||||||| ||     | ||||||||||||||||| ||||| ||||| ||||| |||||| | ||  | || |||
----------------------------------------------------------------------------gtaagtggactttattgtttgcca-ctaaatatgtgctatattaatgttgacattttcccttaacttcttttgcctttcgtatcaactggcaattgttaaaatgatacagGTAAATATGTGGCTCCAGAAGTCCTGCGAAATGAAGAGTATGATACCAAAGTGGATGTCTTCTCATTCGCTCTGATACTTCAGGAG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tattttggaagggtctatgctgatgttactctcttttttcgttctggctaagcagGGCGATATATGGCTCCAGAGGTTTATAGGAATGAAGAGTATGATACAAAAGTAGATGTATTCTCTTTCGCTTTAATCTTACAAGAG
                 tgctgat  putative branch site (score: 3)
                         ttactctcttttttcg  CT-rich tract
                               tctttttt  TA-rich tract