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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagtactactgcctctttccagacaagcaagcctaagatattaacaatcgtagaacataaacaaatgcgggtattgtttacttttcctgaactaaattctcgaaactttgcagATGGGATTTCTGTTTTTATCAAGGCAGTGTGGTCGAACATCTTGATGGTCACACTGATATAATCCACAAACAGCTATACAGCGATTGGTTACCTTG

Basic information

species Arabidopsis thaliana
transcript AT2G28320.1
intron # 8
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT2G28320.1 (Arabidopsis thaliana), 3'ss of exon 8
lower sequence: GLYMA12G29750.1 (Glycine max), 3'ss of exon 8
gtaagtactactgcctctttccagacaagcaagcctaagatattaacaatcgtagaacat-aaacaaatgcgggtattgtttacttttcctgaactaaattctcgaaactttgcagATGGGATTTCTGTTTTTATCAAGGCAGTGTGGTCGAACATCTTGATGGTCACACTGATATAATCCACAAACAGCTATACAGCGATTGGTTACCTTG
  | |   |  |    |      |     ||||   ||    ||  || |  ||    || | |  |||| || | ||  | | | |   | ||      | |||    |||||||||||||||||||||| ||  | || | |||||| || ||  | |||||||||||||| || || |||||||||||||  ||||||||||| |||||
--atgatttgataaaccaactgtggttgtcaagttcaa----tttgcattgttaatttattatattaatgaggttgttact-attatcattaaa------tatcgg---tttgcagATGGGATTTCTGTTTCTACAAGGGAAATGTGGTGGAGCACTTGGATGGTCACACTGACATTATTCACAAACAGCTATTTAGCGATTGGTTGCCTTG

upper sequence: AT2G28320.1 (Arabidopsis thaliana), 3'ss of exon 8
lower sequence: GLYMA13G40010.1 (Glycine max), 3'ss of exon 8
gtaagtactactgcctctttccagacaagcaagcctaagatattaacaatcgtagaacataaacaaatgcgggtattgtttacttttcctgaactaaattctcgaaactttgcagATGGGATTTCTGTTTTTATCAAGGCAGTGTGGTCGAACATCTTGATGGTCACACTGATATAATCCACAAACAGCTATACAGCGATTGGTTACCTTG
 |||   | ||      | || ||   ||   ||       ||||   ||  ||  |  | ||  |  |  | || | ||  | ||   |  | |||||    |     ||||||||||||||||||||| ||  |||| | |||||| || ||  | |||||||||||||| || || |||||||| ||||  ||||||||||| |||||
-taaac-caaccatggttgtcaagttcagtttgc-------attattgatt-tattatgttaatgag-gttgttaatattatcattaaatacattaaatatcgg----cttgcagATGGGATTTCTGTTTCTACAAAGGAAATGTGGTGGAGCACTTGGATGGTCACACTGACATTATTCACAAACAACTATTTAGCGATTGGTTGCCTTG

upper sequence: AT2G28320.1 (Arabidopsis thaliana), 3'ss of exon 8
lower sequence: Vv06s0004g02720.t01 (Vitis vinifera), 3'ss of exon 8
gtaagtactactgcctctttccagacaagcaagcctaagatattaacaatcgtagaacataaacaaatgcgggtattgtttacttttcctgaactaaattctcga--aactttgcagATGGGATTTCTGTTTTTATCAAGGCAGTGTGGTCGAACATCTTGATGGTCACACTGATATAATCCACAAACAGCTATACAGCGATTGGTTACCTTG
               |          || |    |||  || ||  |  |  |      |||   |  | |||| ||    |   ||    |  |||  |  | |      |||||||||||| |||||||||||  | || | |||||| || || ||||||||||| || |||||  | ||||| ||| |||| || ||||||||||||||
------------atttgaaattgattaatcccatctagcattttggcctt--ttctttttaattgatagtgggtgtta---agcattaacaatttaatgttgcaactggtcttgcagATGGGACTTCTGTTTTTACAAGGGAAATGTGGTGGAGCACCTTGATGGTCATACGGATATTGTTCACAAGCAGTTATATAGAGATTGGTTACCTTG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aaacaaatgcgggtattgtttacttttcctgaactaaattctcgaaactttgcagATGGGATTTCTGTTTTTATCAAGGCAGTGTGGTCGAACATCTTGATGGTCACACTGATATAATCCACAAACAGCTATACAGCGATTGGTTACCTTG
                               aactaaa  putative branch site (score: 2)
             tattgtttactttt  TA-rich tract