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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatggtcaagctattttcatttttcgttccagaagaagacactacttttacaagacatataataaagttttgacatacgttctcatagGAAGTTCGTGGTAATGGTCATGTTCCAGAATCAGATATTGTTCAAGAATGCAGAAGA

Basic information

species Arabidopsis thaliana
transcript AT5G11790.1
intron # 7
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|124930340|gb|EL007799.1|EL007799
EST:     GTACATGTGGAGTTGTTAAGGAAATGTTACTAAAACGGTACTTCAGCAAG                         GAAGTTCGTGGTAATGGTCATGTT
genomic: GTACATGTGGAGTTGTTAAGGAAATGTTACTAAAACGGTACTTCAGCAAGgtatggtcaa ... gttctcatagGAAGTTCGTGGTAATGGTCATGTT
EST: gi|125287082|gb|EL301167.1|EL301167
EST:     GGAGTTGTTAAGGAAATGTTACTAAAACGGTACTTCAGCAAG                         GAAGTTCGTGGTAATGGTCATGTTCCAGAATCAGATATTG
genomic: GGAGTTGTTAAGGAAATGTTACTAAAACGGTACTTCAGCAAGgtatggtcaa ... gttctcatagGAAGTTCGTGGTAATGGTCATGTTCCAGAATCAGATATTG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

agaagacactacttttacaagacatataataaagttttgacatacgttctcatagGAAGTTCGTGGTAATGGTCATGTTCCAGAATCAGATATTGTTCAAGAATGCAGAAGA
                                  ttttgac  putative branch site (score: 3)
                                            cgttctc  putative PPT
            ttttacaagacatata  TA-rich tract