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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatctctcttttctcaccccctctccctatatatacaacaacaatgttatattgaatgatctcaaatattattacagGAAGACACAATATCTATTAACCACAATTGGCTCAACGCATACAACCTATCTTGGGTG

Basic information

species Arabidopsis thaliana
transcript AT5G63080.1
intron # 6
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT5G63080.1 (Arabidopsis thaliana), 3'ss of exon 6
lower sequence: GLYMA04G35940.1 (Glycine max), 3'ss of exon 8
----------------------gtatctctcttttctcaccccctctccctatatatacaacaacaatgttata-ttgaatgatctcaaatattattacagGAAGACACAATATCTATTAACCACAATTGGCTCAACGCATACAACCTATCTTGGGTG
                      | | || | |  ||  |     |   ||   ||||   | |   || | ||| ||  ||| | ||   || | || ||||| || ||||||||||| |||||||||||| |||| || || ||||| |||||||||
aacaaatagatttctgtctacagcagctttatcatcagatgattttgtccatgatatttgata-tgatctaataatttgatggtgtctcttactctttcagGAGGATACAATATCTATAAACCACAATTGGTTCAATGCCTATAACCTTTCTTGGGTG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctccctatatatacaacaacaatgttatattgaatgatctcaaatattattacagGAAGACACAATATCTATTAACCACAATTGGCTCAACGCATACAACCTATCTTGGGTG
                        ttatattgaatgatct  TA-rich tract