Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttcagataatgttcatcttctgcatatgtttaagtgcatgcatggttacctgttactttgtttttactgattcatttgtctctgggttctgttgtgcagGAAGAAAATCCTTCCCGGGAATGCACAATTGTACGGACAGCTGCGAAGCTGACTCCATTTTACTTCAATAAAATTCCGGAAACAGACGACTCTAATGTAC

Basic information

species Arabidopsis thaliana
transcript AT4G35910.1
intron # 6
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT4G35910.1 (Arabidopsis thaliana), 3'ss of exon 6
lower sequence: Vv08s0007g08560.t01 (Vitis vinifera), 3'ss of exon 5
--gttcag---ataatgttca-tcttctgcatatgtttaagtgcatgcatggttacctgttactttgtttttactgattcatttgtctctgggttctgttgtgcagGAAGAAAATCCTTCCCGGGAATGCACAATTGTACGGACAGCTGCGAAGCTGACTCCATTTTACTTCAATAAAATTCCGGAAACAGACGACTCTAATGTAC
  |||||    | |   | || | ||||  |  |    |||    || | |  | |||  |  |   ||  |  || |  | |  | | |   || ||    ||||||||| || ||||| || |||||||| || ||| | |||||||  ||| ||||||||||| | |||||| | ||||| ||||  || ||||||||||| |
ctgttcaataaacagcatccaattttcttgagttagaaaagattctgaacgtgtccctagtcatcaattccttatggt--actcctttttcatttttg----gcagGAAGAGAACCCTTCTCGAGAATGCACGATAGTAAGAACAGCTGGAAAGTTGACTCCATTTCATTTCAATCAGATTCCAGAAAGTGATGACTCTAATGTCC


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gttacctgttactttgtttttactgattcatttgtctctgggttctgttgtgcagGAAGAAAATCCTTCCCGGGAATGCACAATTGTACGGACAGCTGCGAAGCTGACTCCATTTTACTTCAATAAAATTCCGGAAACAGACGACTCTAATGTAC
                    tactgat  putative branch site (score: 2)
                                          ttctgtt  putative PPT
        ttactttgttttta  TA-rich tract