1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
gtaagtagaactttctggtaatctataacgttttatcagtattcttcatatataaggctcttattttaggcaacttaaaattttcatttagACATATACACCAGACTCTCCGGGTGATGCCACCAGAAACCTGTCTCAGCAATGTCTTAACGCACTTGCGAAAGCTGTGCCTGGTTTTCTTGGTGGGAGTG
species | Arabidopsis thaliana |
transcript | AT2G45290.1 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: CAGGTGAATTGCCCGTTGGTTGGGAGAAGGCACTTCCT ACATATACACCAGACTCTCCGGGTGATGCCACCAGAAACCTGTCTCAGCAAEST: gi|116457540|gb|EG500132.1|EG500132
genomic: CAGGTGAATTGCCCGTTGGTTGGGAGAAGGCACTTCCTgtaagtagaa ... tttcatttagACATATACACCAGACTCTCCGGGTGATGCCACCAGAAACCTGTCTCAGCAA
EST: AATCTATTATCTCAGGTGAATTGCCCGTTGGTTGGGAGAAGGCACTTCCT ACATATACACCAGACTCTCCGGGTGATGCCACCAGAAACCTGTCTCAGCAA
genomic: AATCTATTATCTCAGGTGAATTGCCCGTTGGTTGGGAGAAGGCACTTCCTgtaagtagaa ... tttcatttagACATATACACCAGACTCTCCGGGTGATGCCACCAGAAACCTGTCTCAGCAA
cagtattcttcatatataaggctcttattttaggcaacttaaaattttcatttagACATATACACCAGACTCTCCGGGTGATGCCACCAGAAACCTGTCTCAGCAATGTCTTAACGCACTTGCGAAAGCTGTGCCTGGTTTTCTTGGTGGGAGTG
ttttcattt CT-rich tract
aacttaaaattttcat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagtagaactttctggtaatctataacgttttatcagtattcttcatatataaggctcttattttaggcaacttaaaattttcatttagACATATACACCAGACTCTCCGGGTGATGCCACCAGAAACCTGTCTCAGCAATGTCTTAACGCACTTGCGAAAGCTGTGCCTGGTTTTCTTGGTGGGAGTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG