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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagagtttcggagaggaatgctgtttattcgaggagctaccacatcaatgattgaccatcttattgagtttgctcatgttgcagAACTTCCTGAGAAATCATACGGTGCTGATTGCCGTATATATGTGCCTGATCACCCAACAAACAGGTTTAAGAATCTTTAT

Basic information

species Arabidopsis thaliana
transcript AT1G15110.2
intron # 6
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G15110.2 (Arabidopsis thaliana), 3'ss of exon 6
lower sequence: GLYMA20G25830.2 (Glycine max), 3'ss of exon 8
-----------------------------gtaagagtttcggagaggaatgctgtttattcgaggagctaccacatcaatga---ttgaccatcttattgagtttgctcatgtt--------gcagAACTTCCTGAGAAATCATACGGTGCTGATTGCCGTATATATGTGCCTGATCACCCAACAAACAGGTTTAAGAATCTTTAT
                              |   | |  | |  |       |  ||  |   | | || |    |   |||   ||||  |  || |||    |    |||||        ||||||||||| |||| ||| || || ||||| || ||||||||| |||||||  ||||  ||| ||||||||||||| |||||
gtaattcaatctgattcttttttattagctttgaattggctggaaatggaattaattgattatgtatctgcattgtatttgagatttgaaaacatttttggtaattactatgtttgatcttggcagAACTTCCAGAGAGATCTTATGGCGCTGACTGTCGTATATATCTGCCTGAAAACCCTGCAAGCAGGTTTAAGAATGTTTAT

upper sequence: AT1G15110.2 (Arabidopsis thaliana), 3'ss of exon 6
lower sequence: Vv01s0011g04370.t01 (Vitis vinifera), 3'ss of exon 6
-----------------------------------------------------------------------------------------gtaagagtttcggagaggaatgctgtttattcgaggagc-taccacatcaatgattgaccatcttattgagtttgc-tcatgttgcagAACTTCCTGAGAAATCATACGGTGCTGATTGCCGTATATATGTGCCTGATCACCCAACAAACAGGTTTAAGAATCTTTAT
                                                                                          |   | || | ||||   ||   | |||||    |    | | | |||  |  | || | | ||      ||||  | |  |  ||||||||||||| | ||| || |||||||||||||| || |||||||||||  | ||||| | ||||||||||||| |||||
gtaatgcatttgaactttgccaaactctcccctctgaacattacttgacatggattagtttgttttgctttctgtaatgcaccttctcttttgtatttgctgagacagat-tagcttattgactgcatattcaagatctgtc-tagatcgtttttaactatttgtatgacttaacagAACTTCCTGAAAGATCGTATGGTGCTGATTGCCGCATTTATGTGCCTGAAAATCCAACCAGCAGGTTTAAGAATGTTTAT


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cgaggagctaccacatcaatgattgaccatcttattgagtttgctcatgttgcagAACTTCCTGAGAAATCATACGGTGCTGATTGCCGTATATATGTGCCTGATCACCCAACAAACAGGTTTAAGAATCTTTAT
                    gattgac  putative branch site (score: 3)
                                       tttgctc  putative PPT
                            atcttatt  TA-rich tract