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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatactatacctggttagctcgtttgaagaaactcaacttgtttctttgaagtttactctttccagttttcatacctttcccttgtgtctgatcttgatacggacaaatacatattatatcaatgtaagaaacttccttgcaattatttgcagGCGGCCTAAACTTGATGGTGATAATTGGTGGCGAGGTCATGCAGCTGCCTTCCTTAAGTTCATAAATTTTCCTGCTCATGTTCTTCGACGAGGCCGAATT

Basic information

species Arabidopsis thaliana
transcript AT1G05790.2
intron # 6
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G05790.2 (Arabidopsis thaliana), 3'ss of exon 6
lower sequence: LOC_Os01g67420.1 (Oryza sativa), 3'ss of exon 6
gtatactatacctggttagctcgtttgaagaaactcaacttgtttctttgaagtttactctttccagttttcatacctttcccttgtgtctgatcttgatacggacaaatacatattatatcaatgtaagaaacttccttgcaattatttgcagGCGGCCTAAACTTGATGGTGATAATTGGTGGCGAGGTCATGCAGCTGCCTTCCTTAAGTTCATAAATTTTCCTGCTCATGTTCTTCGACGAGGCCGAATT
                                           | ||    | | |  |   |     | | ||  || ||  |||| | |  | |   | | |     || ||| |         || | |||||   |       ||  |||||| ||    ||||| || ||||||||||||||||| ||||||||||| ||||| || |   | | | | ||  |  | ||||||  |  ||||||  ||
-------------------------------------------tgctccagattatgtttagtttttatgtgatgtctgtct-ttgtctgttgtgtctttgctgcatggtatatagt---cacgcttatggaactttagt-------ttgacagGCGACCAGTTCTTGAAGGCGATAATTGGTGGCGAGGGCATGCAGCTGCTTTCCTAAAATATGTCAGTGTACCCCCGGAAGTTCTTATAAAAGGCCGTGTT

upper sequence: AT1G05790.2 (Arabidopsis thaliana), 3'ss of exon 6
lower sequence: GLYMA10G44440.1 (Glycine max), 3'ss of exon 4
-----gtatactatacctggttagctc----gtttgaagaa--actca-acttgtttctttgaagtt----tactctttccagttttc----atacctttcccttgtgtctgatcttg-atacggac------aaatacatatt--atatcaatgtaagaaacttccttgcaattatttgcagGCGGCCTAAACTTGATGGTGATAATTGGTGGCGAGGTCATGCAGCTGCCTTCCTTAAGTTCATAAATTTTCCTGCTCATGTTCTTCGACGAGGCCGAATT-
      |    || | ||  || ||||    |  |   |||  ||| | |  | | ||||||   ||     | ||| |||   | ||     | ||||| | || |||||  |     ||||  |       |||| ||| ||  ||||     |   |   | |  |   ||   ||    |   || | ||| ||||||||||| ||||||||||||||||| || ||||| || ||||   | ||||| ||| |  | |  |||  ||  || ||| |  
gtatttttctttagaactcattggctctcaggcatactgaattactgatatatatatctttggttttcctccattctctccgtctctcctctctccctttacattatgtctttttcaatatacaaattaaaaaaaattcatcttcaatattgtgattttatgttcctatttcatatcttcttagACACCCATACTGGATGGTGATAACTGGTGGCGAGGTCATGCTGCAGCCTTTCTAAAGTATGTCAATTTGCCTCCAGAAGCGCTTATACATGGGCGAGTCA

upper sequence: AT1G05790.2 (Arabidopsis thaliana), 3'ss of exon 6
lower sequence: GLYMA20G39210.1 (Glycine max), 3'ss of exon 5
gtatactatacctggttagctcgtttgaagaaactcaacttgtttctttgaagtttactctttccagttttcatacctttcccttgtgtctgatcttgatacggacaaa-tacatattatatcaatgtaagaaacttccttgcaattatttgcagGCGGCCTAAACTTGATGGTGATAATTGGTGGCGAGGTCATGCAGCTGCCTTCCTTAAGTTCATAAATTTTCCTGCTCATGTTCTTCGACGAGGCCGAATT
                                                     | |    | |  ||     | | |||    || |||   || ||| |   |  ||  ||   |  ||||  || || |   ||   |  ||  |  ||  || || |||  ||| ||||||||||| ||||||||||||||||| || ||||| || |||| | | ||||| ||| |  | |  ||| |||  || ||| | 
----------------------------------------------------ttctttcatcttaagaaaagaaaacttattattttgtactattttggtttagtaaatctatgcacaatat-gatttatgttcctatttcacatcttctt--agACGACCTGTACTGGATGGTGATAACTGGTGGCGAGGTCATGCTGCAGCCTTTCTAAAGTACGTCAATTTGCCTCCAGAAGCGCTTAGACATGGGCGAGTC

upper sequence: AT1G05790.2 (Arabidopsis thaliana), 3'ss of exon 6
lower sequence: Vv05s0124g00140.t01 (Vitis vinifera), 3'ss of exon 4
gtatactatacctggttagctcgtttgaagaaactcaacttgtttctttgaagtttactctttccagttttcatacctttcccttgtg-tctgatcttgatacggacaaatacatattatatcaatgtaagaaacttc-cttgcaattatttgcagGCGGCCTAAACTTGATGGTGATAATTGGTGGCGAGGTCATGCAGCTGCCTTCCTTAAGTTCATAAATTTTCCTGCTCATGTTCTTCGACGAGGCCGAATT
|||    ||   |||  | ||   || | |   |     ||   | | |||   | |       |    | |||    |    ||| | | | |   |       |  |||     |  |||   | |    |  ||   || |   | |||  ||||  |||  |||| | |||||||| |||||||||||||||||||| ||||| || || |   |   |||  |  |  | || ||||||| ||| ||  ||
gtagttaatttatgggcatctttctttatgtg-catgtattccatatctgatactaatctagaaccaactacatttaatgtagttgagatttaaagctttcttaaattaatttggttactattttttttttcatttttgttttcctctttttttagGCAACCTGTACTTCAGGGTGATAACTGGTGGCGAGGTCATGCAGCAGCCTTTCTGAAATATGTTCGTTTATCCCCAGAAGTACTTCGACTAGGTCGTGTT

upper sequence: AT1G05790.2 (Arabidopsis thaliana), 3'ss of exon 6
lower sequence: EFJ09300 (Selaginella moellendorffii), 3'ss of exon 2
gtatactatacctggttagctcgtttgaagaaactcaacttgtttctttgaagtttactctttccagttttcatacctttcccttgtgtctgatcttgatacggacaaatacatattatatcaatgtaagaaacttccttgcaattatttgcagGCGGCCTAAACTTGATGGTGATAATTGGTGGCGAGGTCATGCAGCTGCCTTCCTTAAGTTCATAAATTTTCCTGCTCATGTTCTTCGACGAGGCCGAATT
                                                                                                |    ||      |   | | || || | | || |     |   ||  |   ||| ||| | |  |   ||||||||||||||||||||| ||| |||||| |||| || |||          |  | || ||  | || ||      |||  | |||
-----------------------------------------------------------------------------------------------gtagctcgagtt--tttctttcatctccaagaaacagctaactaagctttggcttgtagGAGCCTAAGTGTTGATGGTGATAATTGGTGGCAAGGCCATGCAACTGCATTTCTTTGTGCTGCTCACCTCCCAGCCGAGGTGCTCTTGAAAGGAAGGATT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tacggacaaatacatattatatcaatgtaagaaacttccttgcaattatttgcagGCGGCCTAAACTTGATGGTGATAATTGGTGGCGAGGTCATGCAGCTGCCTTCCTTAAGTTCATAAATTTTCCTGCTCATGTTCTTCGACGAGGCCGAATT
       aaatacatattatatc  TA-rich tract