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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagtctaattgttctgaggaagcttgaattgaatatatgcaacaaaataatggttttaattagttttgacatatttcactctcatttgcagATAGAAGCCTATCCAAAAGCAACAGCAGTGTTGGTACGCAATCACGGAGTTTACATTTGGGGTGATTCTTGGATCCATGCTAAGACACAG

Basic information

species Arabidopsis thaliana
transcript AT5G53850.3
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT5G53850.3 (Arabidopsis thaliana), 3'ss of exon 5
lower sequence: GLYMA06G36620.1 (Glycine max), 3'ss of exon 4
-gtaagtctaattgttctgaggaagcttga-----attgaatatatgcaacaaaataatggttttaattagttttgacatat-ttcactctcatttgcagATAGAAGCCTATCCAAAAGCAACAGCAGTGTTGGTACGCAATCACGGAGTTTACATTTGGGGTGATTCTTGGATCCATGCTAAGACACAG
 | | ||   || || |  | |  | |  |      ||   | | | | ||    |  | ||| |   |    ||||   || ||   ||  ||||| |||| |||||||| || ||| ||||||||||| | ||||||||||| ||| | || |||||||| || || ||||||  |||||| || |||
tgaaggttacatagtccatatggtgttgcactatttttctctcttttctactgttttttagttatgtgttaccttgattaatcttttatccaatttgtagATTGAAGCCTACCCTAAAACAACAGCAGTGCTTGTACGCAATCATGGAATATATATTTGGGGAGACTCGTGGATCAGTGCTAAAACTCAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|164190881|gb|ES162228.1|ES162228
EST:     TAGAGAACACAGCATATGAGAATGAACTAACAGATTCACTTACCAAAGCT                         ATAGAAGCCTATCCAAAAGCAACAGCAG
genomic: TAGAGAACACAGCATATGAGAATGAACTAACAGATTCACTTACCAAAGCTgtaagtctaa ... tcatttgcagATAGAAGCCTATCCAAAAGCAACAGCAG






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atgcaacaaaataatggttttaattagttttgacatatttcactctcatttgcagATAGAAGCCTATCCAAAAGCAACAGCAGTGTTGGTACGCAATCACGGAGTTTACATTTGGGGTGATTCTTGGATCCATGCTAAGACACAG
                           ttttgac  putative branch site (score: 3)
                                     tttcactctcattt  putative PPT
       aaaataatggttttaa  TA-rich tract