1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
gcaagaaagctacctcgattaaaaaaaccgatgatcgccactttctttgttttttgtttgcatgtctaaactgtttacaatatggcttgaaaccagGGAGAAGATGCATCTATTGAAGCTGCAGTGATGGCGATATCAAGTTGCTTACGAGAACCAGTTGGTCGAAACAACTGTGCAGAGATCCAATGAAGTATAT
species | Arabidopsis thaliana |
transcript | AT5G52970.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: GGAGTCGACTGGCTGGGAAATACGGCAATATGTTTTACTGGAAAGAGAAG GGAGAAGATGCATEST: gi|125281559|gb|EL295644.1|EL295644
genomic: GGAGTCGACTGGCTGGGAAATACGGCAATATGTTTTACTGGAAAGAGAAGgcaagaaagc ... ttgaaaccagGGAGAAGATGCAT
EST: GGAGTCGACTGGCTGGGAAATACGGCAATATGTTTTACTGGAAAGAGAAG GGAGAAGATGCATCTATTGAAGCTGCAGTGEST: gi|124749206|gb|EH839336.1|EH839336
genomic: GGAGTCGACTGGCTGGGAAATACGGCAATATGTTTTACTGGAAAGAGAAGgcaagaaagc ... ttgaaaccagGGAGAAGATGCATCTATTGAAGCTGCAGTG
EST: GGAGTCGACTGGCTGGGAAATACGGCAATATGTTTTACTGGAAAGAGAAG GGAGAAGATGCATCTATTGAAGCTGCAGTGATGGCGATATEST: gi|124897541|gb|EH973755.1|EH973755
genomic: GGAGTCGACTGGCTGGGAAATACGGCAATATGTTTTACTGGAAAGAGAAGgcaagaaagc ... ttgaaaccagGGAGAAGATGCATCTATTGAAGCTGCAGTGATGGCGATAT
EST: AATATGTTTTACTGGAAAGAGAAG GGAGAAGATGCATCTATTGAAGCTGCAGTGATGGCGATATCAAGTTGCTTAEST: gi|125049238|gb|EL121507.1|EL121507
genomic: AATATGTTTTACTGGAAAGAGAAGgcaagaaagc ... ttgaaaccagGGAGAAGATGCATCTATTGAAGCTGCAGTGATGGCGATATCAAGTTGCTTA
EST: GGAGTCGACTGGCTGGGAAATACGGCAATATGTTTTACTGGAAAGAGAAG GGAGAAGATGCATCTATTGAAGCTGCAGTGA
genomic: GGAGTCGACTGGCTGGGAAATACGGCAATATGTTTTACTGGAAAGAGAAGgcaagaaagc ... ttgaaaccagGGAGAAGATGCATCTATTGAAGCTGCAGTGA
tttctttgttttttgtttgcatgtctaaactgtttacaatatggcttgaaaccagGGAGAAGATGCATCTATTGAAGCTGCAGTGATGGCGATATCAAGTTGCTTACGAGAACCAGTTGGTCGAAACAACTGTGCAGAGATCCAATGAAGTATAT
gtctaaa putative branch site (score: 3)
ttttttgttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gcaagaaagctacctcgattaaaaaaaccgatgatcgccactttctttgttttttgtttgcatgtctaaactgtttacaatatggcttgaaaccagGGAGAAGATGCATCTATTGAAGCTGCAGTGATGGCGATATCAAGTTGCTTACGAGAACCAGTTGGTCGAAACAACTGTGCAGAGATCCAATGAAGTATAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATC