1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
gtaactcaatgaccgatgtgtaattctcacttcccagtgaaatcatcaaatatatatcagtttctcatattaccgtgtttcaattgttgcagAGGTTGCTGGCGAAATATGGATCACTCGTCTCCGTGATCTCCATGGTGGTTTGTTTCATATACTTGGTGGCAACACCTAAGTCCAACGTATCAAAGGCAA
species | Arabidopsis thaliana |
transcript | AT5G14030.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: AAACCTTTGGACGTGGCCAAGEST: gi|125234229|gb|EL248314.1|EL248314
genomic: AAACCTTTGGACGTGGCCAAG
EST: AAACCTTTGGACGTGGCCAAGEST: gi|86022138|gb|DR317891.1|DR317891
genomic: AAACCTTTGGACGTGGCCAAG
EST: AGGAGGTATTCTGTCTCATTCTATCGAATTGGAGGCCAAGGTTAAAGGAGTCTTCTACGGTGCTCCTGCTGTCGTTACTTTCCGCATCCCCACTAAGCCAGCTCTTCAGEST: gi|86022144|gb|DR317897.1|DR317897
genomic: AGGAGGTATTCTGTCTCATTCTATCGAATTGGAGGCCAAGGTTAAAGGAGTCTTCTACGGTGCTCCTGCTGTCGTTACTTTCCGCATCCCCACTAAGCCAGCTCTTCAG
EST: AGGAGGTATTCTGTCTCATTCTATCGAATTGGAGGCCAAGGTTAAAGGAGTCTTCTACGGTGCTCCTGCTGTCGTTACTTTCCGCATCCCCACTAAGCCAGCTCTTCAGEST: gi|164236015|gb|ES059156.1|ES059156
genomic: AGGAGGTATTCTGTCTCATTCTATCGAATTGGAGGCCAAGGTTAAAGGAGTCTTCTACGGTGCTCCTGCTGTCGTTACTTTCCGCATCCCCACTAAGCCAGCTCTTCAG
EST: AAACCTTTGGACGTGGCCAAGEST: gi|116399793|gb|EG442385.1|EG442385
genomic: AAACCTTTGGACGTGGCCAAG
EST: AGGAGGTATTCTGTCTCATTCTATCGAATGGGAGGCCAAGGTTAAAGGAGTCTTCTACGGTGCTCCTGCTGTCGTTACTTTCCGCATCCCCACTAAGCCAGCTCTTCAGEST: gi|164048468|gb|ES140634.1|ES140634
genomic: AGGAGGTATTCTGTCTCATTCTATCGAATTGGAGGCCAAGGTTAAAGGAGTCTTCTACGGTGCTCCTGCTGTCGTTACTTTCCGCATCCCCACTAAGCCAGCTCTTCAG
EST: AACCTTTGGACGTGGCCAAGEST: gi|86076778|gb|DR372535.1|DR372535
genomic: AACCTTTGGACGTGGCCAAG
EST: AGGAGGTATTCTGTCTCATTCTATCGAATTGGAGGCCAAGGTTAAAGGAGTCTTCTACGGTGCTCCTGCTGTCGTTACTTTCCGCATCCCCACTAAGCCAGCTCTTCAGEST: gi|116399796|gb|EG442388.1|EG442388
genomic: AGGAGGTATTCTGTCTCATTCTATCGAATTGGAGGCCAAGGTTAAAGGAGTCTTCTACGGTGCTCCTGCTGTCGTTACTTTCCGCATCCCCACTAAGCCAGCTCTTCAG
EST: AGGAGGTATTCTGTCTCATTCTATCGAATTGGAGGCCAAGGTTAAAGGAGTCTTCTACGGTGCTCCTGCTGTCGTTACTTTCCGCATCCCCACTAAGCCAGCTCTTCAGEST: gi|125133448|gb|EL174920.1|EL174920
genomic: AGGAGGTATTCTGTCTCATTCTATCGAATTGGAGGCCAAGGTTAAAGGAGTCTTCTACGGTGCTCCTGCTGTCGTTACTTTCCGCATCCCCACTAAGCCAGCTCTTCAG
EST: AAACCTTTGGACGTGGCCAAGEST: gi|124926281|gb|EL004153.1|EL004153
genomic: AAACCTTTGGACGTGGCCAAG
EST: ACGTGGCCAAGEST: gi|124759017|gb|EH849147.1|EH849147
genomic: ACGTGGCCAAG
EST: CCTTTGGACGTGGCCAAGEST: gi|124927602|gb|EL005326.1|EL005326
genomic: CCTTTGGACGTGGCCAAG
EST: AAACCTTTGGACGTGGCCAAGEST: gi|124746719|gb|EH837031.1|EH837031
genomic: AAACCTTTGGACGTGGCCAAG
EST: CTTTGGACGTGGCCAAG
genomic: CTTTGGACGTGGCCAAG
tgaaatcatcaaatatatatcagtttctcatattaccgtgtttcaattgttgcagAGGTTGCTGGCGAAATATGGATCACTCGTCTCCGTGATCTCCATGGTGGTTTGTTTCATATACTTGGTGGCAACACCTAAGTCCAACGTATCAAAGGCAA
aaatatatatcagttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaactcaatgaccgatgtgtaattctcacttcccagtgaaatcatcaaatatatatcagtttctcatattaccgtgtttcaattgttgcagAGGTTGCTGGCGAAATATGGATCACTCGTCTCCGTGATCTCCATGGTGGTTTGTTTCATATACTTGGTGGCAACACCTAAGTCCAACGTATCAAAGGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG