1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...ataattgttttctgaagtggtctctggttcatttttatcttgttctcggacctcgtcatttagtatcttatttattttgcatgtatactgtttgcttcagGCAAAAGATCAAAACCAGTGGCGGATGTCTTTTGTCATGCCCTCAAAGTATGGTTCGAATTTGCCATTACCAAAAGATCCTTCAGTCAAAATTCAGCAAG
species | Arabidopsis thaliana |
transcript | AT3G10130.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: CAACTCCAGTGATAACTAGCAAG GCAAAAGAATCAAAACCAGTGGCGGATGTCTTTTGTCATGCCCTCAAAGTAEST: gi|124783241|gb|EH873111.1|EH873111
genomic: CAACTCCAGTGATAACTAGCAAGgtaaatatat ... tttgcttcagGCAAAAG-ATCAAAACCAGTGGCGGATGTCTTTTGTCATGCCCTCAAAGTA
EST: AATCTGTTGGAGAGAAGATGGAAATGACAACTCCAGTGATAACTAGCAAG GCAAAAGATCAAAACCAGTGGCGGATGTCTTTTGTCEST: gi|125169383|gb|EL193449.1|EL193449
genomic: AATCTGTTGGAGAGAAGATGGAAATGACAACTCCAGTGATAACTAGCAAGgtaaatatat ... tttgcttcagGCAAAAGATCAAAACCAGTGGCGGATGTCTTTTGTC
EST: TGATAACTAGCAAG GCAAAAGATCAAAACCAGTGGCGGATGTCTTTTGTCATGCCCTCAAAGTATEST: gi|124923962|gb|EL002101.1|EL002101
genomic: TGATAACTAGCAAGgtaaatatat ... tttgcttcagGCAAAAGATCAAAACCAGTGGCGGATGTCTTTTGTCATGCCCTCAAAGTAT
EST: ATAACTAGCAAG GCAAAAGATCAAAACCAGTGGCGGATGTCTTTTGTCATGCCCTCAAAGTAT
genomic: ATAACTAGCAAGgtaaatatat ... tttgcttcagGCAAAAGATCAAAACCAGTGGCGGATGTCTTTTGTCATGCCCTCAAAGTAT
tcggacctcgtcatttagtatcttatttattttgcatgtatactgtttgcttcagGCAAAAGATCAAAACCAGTGGCGGATGTCTTTTGTCATGCCCTCAAAGTATGGTTCGAATTTGCCATTACCAAAAGATCCTTCAGTCAAAATTCAGCAAG
tttgcttc CT-rich tract
tcatttagtatcttat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ataattgttttctgaagtggtctctggttcatttttatcttgttctcggacctcgtcatttagtatcttatttattttgcatgtatactgtttgcttcagGCAAAAGATCAAAACCAGTGGCGGATGTCTTTTGTCATGCCCTCAAAGTATGGTTCGAATTTGCCATTACCAAAAGATCCTTCAGTCAAAATTCAGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG
- - - - - - - - - -gtctctg