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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttcacttttttttcctccctagatccttcttacttgcctatgcctgtgatttatatatggattcttgttttaagtgagcaaactctaatagttacattattcatgctcccagAGACGTGATGATGCACGGCAGTTCATGAAGTTTCTCCACCCTGACCTTGGAATAG

Basic information

species Arabidopsis thaliana
transcript AT1G15110.2
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G15110.1 (Arabidopsis thaliana), 3'ss of exon 5
lower sequence: Vv01s0011g04370.t01 (Vitis vinifera), 3'ss of exon 5
gttcacttttttttcctccctagatccttcttacttgcctatgcctgtgatttatatatggattcttgttttaagtgagcaaactctaatagttacattattcatgctcccagAGACGTGATGATGCACGGCAGTTCATGAAGTTTCTCCACCCTGACCTTGGAATAG
        | | ||  |||||  ||     | ||   || ||   ||    ||   ||||  |||  |||  ||||      |   || |  ||       ||    | ||||| |||||||||||| ||||| ||||||||||||||||| ||||| |||||  | |
--------tgtgtttttccctgaatttccttgac--accaat-tatggatctttggtatgatttccagttaaaagt--attgatagtagtctttctgaatctctcatttccagAAACGTGATGATGCTCGGCAATTCATGAAGTTTCTCCATCCTGATCTTGGTGTTG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tggattcttgttttaagtgagcaaactctaatagttacattattcatgctcccagAGACGTGATGATGCACGGCAGTTCATGAAGTTTCTCCACCCTGACCTTGGAATAG
                         ctctaat  putative branch site (score: 3)
                                              tgctccc  putative PPT
                            taatagttacattatt  TA-rich tract