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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaatctcatctctatcttccaaatcattttttccttcaaataaatacactttttgttgtctttgttcatgttgtaattgatattaattttgacaaataatgtgaagGACGAGTTGATATGGGCGGCAACATGGCTATACAAGGCGACAAGGAATCATCTATACCTTAGCTACCTCAAATTCGAAGCCATAAGCGCTTACGTTGCCG

Basic information

species Arabidopsis thaliana
transcript AT3G43860.1
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT3G43860.1 (Arabidopsis thaliana), 3'ss of exon 4
lower sequence: GLYMA06G05950.1 (Glycine max), 3'ss of exon 4
gtaaatctcatctctatcttccaaatcattttttccttcaaataaatacactt--tttgttgtctttgttcatgttg--taattgatattaattttgacaaataatgtgaagGACGAGTTGATATGGGCGGCAACATGGCTATACAAGGCGACAAGGAATCATCTATACCTTAGCTACCTCAAATTCGAAGCCATAAGCGCTTACGTTGCCG
            |  |  |   |||| | ||| |||   |  ||   ||  ||  |||  | || |  ||  ||     |||   || | |||  ||     |    || |||||||| |||| ||||| |||||||||||||||| ||| || |||||   | | ||  | |  ||| | | |   |||  ||| || ||    || || |
-----------gttcagatgataaattaatttctccggaatttaccaacctttaatttaatttcataattagtgcaaattaacgtatgtgaatggtgttgg-tgggatgcagGACGAGATGATGTGGGCAGCAACATGGCTATACATGGCAACCAGGAAGTCTGTGTATATGAAGTACATAACAGAAGAATGCATGAGTGCAAGTGTAGCAG

upper sequence: AT3G43860.1 (Arabidopsis thaliana), 3'ss of exon 4
lower sequence: GLYMA06G05930.1 (Glycine max), 3'ss of exon 4
gtaaatctcatctctatcttccaaatcattttttccttcaaataaatacactttttgttgtctttgttcatgttg--taattgatattaattttgacaaataatgtgaagGACGAGTTGATATGGGCGGCAACATGGCTATACAAGGCGACAAGGAATCATCTATACCTTAGCTACCTCAAATTCGAAGCCATAAGCGCTTACGTTGCCG
      | |||  ||    || | || |   ||||    |||| | |  |   ||  || || |  ||  ||     |||   || | |||  ||     | |  || |||||||| |||| ||||| |||||||||||||||| ||| || |||||   | | ||  | |  ||| | | |   |||  ||| || ||    || || |
------cacatgactcagatc-atataacaatttctcctaaatta-tgaatcgttaatt-tcataattagtgcaaattaacgtatgtgaatggtgttgg-tgagatgcagGACGAGATGATGTGGGCAGCAACATGGCTATACATGGCAACCAGGAAGTCTGTGTATATGAAGTACATAACAGAAGAATGCATGAGTGCAAGTGTAGCAG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tttgttgtctttgttcatgttgtaattgatattaattttgacaaataatgtgaagGACGAGTTGATATGGGCGGCAACATGGCTATACAAGGCGACAAGGAATCATCTATACCTTAGCTACCTCAAATTCGAAGCCATAAGCGCTTACGTTGCCG
                   ttgtaattgatattaa  TA-rich tract