1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
gtaagctactttatccattttttatacatttaaccattttccgctcaaatctgcactgaaccaactagtgatgtttgcttcagGTGGATCCTTTGAAAGATTTTTCATGATATCTTATCTAGATGAAGAGATTCTT
species | Arabidopsis thaliana |
transcript | AT2G42130.5 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: TCCTGCTCTTATCAAGGATACTCTAGCCAGTGGTCTGAGAATTCCCCTTA GTGGATCCTTTEST: gi|116394664|gb|EG437256.1|EG437256
genomic: TCCTGCTCTTATCAAGGATACTCTAGCCAGTGGTCTGAGAATTCCCCTTAgtaagctact ... tttgcttcagGTGGATCCTTT
EST: TCCTGCTCTTATCAAGGATACTCTAGCCAGTGGTCTGAGAATTCCCCTTA GTGGATCCTTTGAAAGATTTTTCATGATATCTTATCTAGATGAAGAGATTCEST: gi|116394666|gb|EG437258.1|EG437258
genomic: TCCTGCTCTTATCAAGGATACTCTAGCCAGTGGTCTGAGAATTCCCCTTAgtaagctact ... tttgcttcagGTGGATCCTTTGAAAGATTTTTCATGATATCTTATCTAGATGAAGAGATTC
EST: TCCTGCTCTTATCAAGGATACTCTAGCCAGTGGTCTGAGAATTCCCCTTA GTGGATCCTTTGAAAGATTTTTCATGATATCTTATCTAGATGAAGAGATTCEST: gi|19877874|gb|AU238705.1|AU238705
genomic: TCCTGCTCTTATCAAGGATACTCTAGCCAGTGGTCTGAGAATTCCCCTTAgtaagctact ... tttgcttcagGTGGATCCTTTGAAAGATTTTTCATGATATCTTATCTAGATGAAGAGATTC
EST: TCCTGCTCTTATCAAGGATACTCTAGCCAGTGGTCTGAGAATTCCCCTTA GTGGATCCTTTGAAAGATTTTTCATGATATCTTATCTAGATGAAGAGATTCEST: gi|116394674|gb|EG437266.1|EG437266
genomic: TCCTGCTCTTATCAAGGATACTCTAGCCAGTGGTCTGAGAATTCCCCTTAgtaagctact ... tttgcttcagGTGGATCCTTTGAAAGATTTTTCATGATATCTTATCTAGATGAAGAGATTC
EST: TCCTGCTCTTATCAAGGATACTCTAGCCAGTGGTCTGAGAATTCCCCTTA GTGGATCCTTTGAAAGATTTTTCATGATATCTTATCTAGATGAAGAGATTCEST: gi|116480998|gb|EG523590.1|EG523590
genomic: TCCTGCTCTTATCAAGGATACTCTAGCCAGTGGTCTGAGAATTCCCCTTAgtaagctact ... tttgcttcagGTGGATCCTTTGAAAGATTTTTCATGATATCTTATCTAGATGAAGAGATTC
EST: TCCTGCTTTTATCAAGGATACTCTAGCCAGTGGTTTGAGAATTCCCCTTA GTGGATCCTTTGAAAGATTTTTCATGATATCTTATCTAGATGAAGAGATTCEST: gi|116480981|gb|EG523573.1|EG523573
genomic: TCCTGCTCTTATCAAGGATACTCTAGCCAGTGGTCTGAGAATTCCCCTTAgtaagctact ... tttgcttcagGTGGATCCTTTGAAAGATTTTTCATGATATCTTATCTAGATGAAGAGATTC
EST: TCCTGCTCTTATCAAGGATACTCTAGCCAGTGGTCTGAGAATTCCCCTTA GTGGATCCTTTGAAAGATTTTTCATGATATCTTATCTAGATGAAGAGATTCEST: gi|125275565|gb|EL289650.1|EL289650
genomic: TCCTGCTCTTATCAAGGATACTCTAGCCAGTGGTCTGAGAATTCCCCTTAgtaagctact ... tttgcttcagGTGGATCCTTTGAAAGATTTTTCATGATATCTTATCTAGATGAAGAGATTC
EST: TTATCAAGGATACTCTAGCCAGTGGTCTGAGAATTCCCCTTA GTGGATCCTTTGAAAGATTTTTCATGATATCTTATCTAGATGAAGAGATTCEST: gi|116394672|gb|EG437264.1|EG437264
genomic: TTATCAAGGATACTCTAGCCAGTGGTCTGAGAATTCCCCTTAgtaagctact ... tttgcttcagGTGGATCCTTTGAAAGATTTTTCATGATATCTTATCTAGATGAAGAGATTC
EST: TCCTGCTCTTATCAAGGATACTCTAGCCAGTGGTCTGAGAATTCCCCTTA GTGGATCCTTTGAAAGATTTTTCATGATATCTTATCTAGATGAAGAGATTCEST: gi|116394269|gb|EG436861.1|EG436861
genomic: TCCTGCTCTTATCAAGGATACTCTAGCCAGTGGTCTGAGAATTCCCCTTAgtaagctact ... tttgcttcagGTGGATCCTTTGAAAGATTTTTCATGATATCTTATCTAGATGAAGAGATTC
EST: TCCTGCTCTTATCAAGGATACTCTAGCCAGTGGTCTGAGAATTCCCCTTA GTGGATCCTTTGAAAGATTTTTCATGATATCTTATCTAGATGAAGAGATTC
genomic: TCCTGCTCTTATCAAGGATACTCTAGCCAGTGGTCTGAGAATTCCCCTTAgtaagctact ... tttgcttcagGTGGATCCTTTGAAAGATTTTTCATGATATCTTATCTAGATGAAGAGATTC
tttaaccattttccgctcaaatctgcactgaaccaactagtgatgtttgcttcagGTGGATCCTTTGAAAGATTTTTCATGATATCTTATCTAGATGAAGAGATTCTT
atttaac putative branch site (score: 3)
tttgcttc putative PPT
atttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagctactttatccattttttatacatttaaccattttccgctcaaatctgcactgaaccaactagtgatgtttgcttcagGTGGATCCTTTGAAAGATTTTTCATGATATCTTATCTAGATGAAGAGATTCTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA