1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
gtgaacacaaaagactcttcaaatttgaaaaagccctactaccataatttgattttggaggtcaaaacttgcagGTTTGTGATGAAATAGAGCATTTAATGGATGATGATGATGACATGGCTGAGATGTATTTGACTGAGAAAAAAGAAAGAGCTGAAGCTCATGCGTCAGAGG
species | Arabidopsis thaliana |
transcript | AT2G03620.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: TGCGCAGGCTAAAAGGTCGTCTTCTTACCTTAACACAGAAAGTTCAGAAG GTTTGTGATGAAATAGAGCATTTAATGGATGATGATGATGACATGGCTGAGEST: gi|116398147|gb|EG440739.1|EG440739
genomic: TGCGCAGGCTAAAAGGTCGTCTTCTTACCTTAACACAGAAAGTTCAGAAGgtgaacacaa ... aaacttgcagGTTTGTGATGAAATAGAGCATTTAATGGATGATGATGATGACATGGCTGAG
EST: TGCGCAGGCTAAAAGGTCGTCTTCTTACCTTAACACAGAAAGTTCAGAAG GTTTGTGATGAAATAGAGCATTTAATGGATGATGATGATGACATGGCTGAGEST: gi|116398342|gb|EG440934.1|EG440934
genomic: TGCGCAGGCTAAAAGGTCGTCTTCTTACCTTAACACAGAAAGTTCAGAAGgtgaacacaa ... aaacttgcagGTTTGTGATGAAATAGAGCATTTAATGGATGATGATGATGACATGGCTGAG
EST: TGCGCAGGCTAAAAGGTCGTCTTCTTACCTTAACACAGAAAGTTCAGAAG GTTTGTGATGAAATAGAGCATTTAATGGATGATGATGATGACATGGCTGAGEST: gi|116398341|gb|EG440933.1|EG440933
genomic: TGCGCAGGCTAAAAGGTCGTCTTCTTACCTTAACACAGAAAGTTCAGAAGgtgaacacaa ... aaacttgcagGTTTGTGATGAAATAGAGCATTTAATGGATGATGATGATGACATGGCTGAG
EST: TGCGCAGGCTAAAAGGTCGTCTTCTTACCTTAACACAGAAAGTTCAGAAG GTTTGTGATGAAATAGAGCATTTAATGGATGATGATGATGACATGGCTGAGEST: gi|116398297|gb|EG440889.1|EG440889
genomic: TGCGCAGGCTAAAAGGTCGTCTTCTTACCTTAACACAGAAAGTTCAGAAGgtgaacacaa ... aaacttgcagGTTTGTGATGAAATAGAGCATTTAATGGATGATGATGATGACATGGCTGAG
EST: TGCGCAGGCTAAAAGGTCGTCTTCTTACCTTAACACAGAAAGTTCAGAAG GTTTGTGATGAAATAGAGCATTTAATGGATGATGATGATGACATGGCTGAGEST: gi|116398331|gb|EG440923.1|EG440923
genomic: TGCGCAGGCTAAAAGGTCGTCTTCTTACCTTAACACAGAAAGTTCAGAAGgtgaacacaa ... aaacttgcagGTTTGTGATGAAATAGAGCATTTAATGGATGATGATGATGACATGGCTGAG
EST: TGCGCAGGCTAAAAGGTCGTCTTCTTACCTTAACACAGAAAGTTCAGAAG GTTTGTGATGAAATAGAGCATTTAATGGATGATGATGATGACATGGCTGAGEST: gi|116400885|gb|EG443477.1|EG443477
genomic: TGCGCAGGCTAAAAGGTCGTCTTCTTACCTTAACACAGAAAGTTCAGAAGgtgaacacaa ... aaacttgcagGTTTGTGATGAAATAGAGCATTTAATGGATGATGATGATGACATGGCTGAG
EST: TGCGCAGGCTAAAAGGTCGTCTTCTTACCTTAACACAGAAAGTTCAGAAG GTTTGTGATGAAATAGAGCATTTAATGGATGATGATGATGACATGGCTGAGEST: gi|116398334|gb|EG440926.1|EG440926
genomic: TGCGCAGGCTAAAAGGTCGTCTTCTTACCTTAACACAGAAAGTTCAGAAGgtgaacacaa ... aaacttgcagGTTTGTGATGAAATAGAGCATTTAATGGATGATGATGATGACATGGCTGAG
EST: CGTCTTCTTACCTTAACACAGAAAGTTCAGAAG GTTTGTGATGAAATAGAGCATTTAATGGATGATGATGATGACATGGCTGAGEST: gi|116398523|gb|EG441115.1|EG441115
genomic: CGTCTTCTTACCTTAACACAGAAAGTTCAGAAGgtgaacacaa ... aaacttgcagGTTTGTGATGAAATAGAGCATTTAATGGATGATGATGATGACATGGCTGAG
EST: TGCGCAGGCTAAAAGGTCGTCTTCTTACCTTAACACAGAAAGTTCAGAAG GTTTGTGATGAAATAGAGCATTTAATGGATGATGATGATGACATGGCTGAGEST: gi|116400881|gb|EG443473.1|EG443473
genomic: TGCGCAGGCTAAAAGGTCGTCTTCTTACCTTAACACAGAAAGTTCAGAAGgtgaacacaa ... aaacttgcagGTTTGTGATGAAATAGAGCATTTAATGGATGATGATGATGACATGGCTGAG
EST: TGCGCAGGCTAAAAGGTCGTCTTCTTACCTTAACACAGAAAGTTCAGAAG GTTTGTGATGAAATAGAGCATTTAATGGATGATGATGATGACATGGCTGAGEST: gi|116400870|gb|EG443462.1|EG443462
genomic: TGCGCAGGCTAAAAGGTCGTCTTCTTACCTTAACACAGAAAGTTCAGAAGgtgaacacaa ... aaacttgcagGTTTGTGATGAAATAGAGCATTTAATGGATGATGATGATGACATGGCTGAG
EST: GCGCAGGCTAAAAAGTCGTCTTCTTACCCTTA-CACAGAAAGTTCAGAAG GTTTGTGATGAAATAGAEST: gi|116398300|gb|EG440892.1|EG440892
genomic: GCGCAGGCTAAAAGGTCGTCTTCTTACC-TTAACACAGAAAGTTCAGAAGgtgaacacaa ... aaacttgcagGTTTGTGATGAAATAGA
EST: GCGCCAGGCTAAAAGGTCGTCTTCTTACCTTAACACAGAAAGTTCAGAAG GTTTGTGATGAAATAGAGCATTTAATGGATGATGATGATGACATGGCTGAGEST: gi|116398332|gb|EG440924.1|EG440924
genomic: GCG-CAGGCTAAAAGGTCGTCTTCTTACCTTAACACAGAAAGTTCAGAAGgtgaacacaa ... aaacttgcagGTTTGTGATGAAATAGAGCATTTAATGGATGATGATGATGACATGGCTGAG
EST: TGCGCAGGCTAAAAGGTCGTCTTCTTACCTTAACACAGAAAGTTCAGAAG GTTTGTGATGAAATAGAGCATTTAATGGATGATGATGATGACATGGCTGAGEST: gi|116400869|gb|EG443461.1|EG443461
genomic: TGCGCAGGCTAAAAGGTCGTCTTCTTACCTTAACACAGAAAGTTCAGAAGgtgaacacaa ... aaacttgcagGTTTGTGATGAAATAGAGCATTTAATGGATGATGATGATGACATGGCTGAG
EST: TGCGCAGGCTAAAAGGTCGTCTTCTTACCTTAACACAGAAAGTTCAGAAG GTTTGTGATGAAATAGAGCATTTAATGGATGATGATGATGACATGGCTGAGEST: gi|116400874|gb|EG443466.1|EG443466
genomic: TGCGCAGGCTAAAAGGTCGTCTTCTTACCTTAACACAGAAAGTTCAGAAGgtgaacacaa ... aaacttgcagGTTTGTGATGAAATAGAGCATTTAATGGATGATGATGATGACATGGCTGAG
EST: TGCGCAGGCTAAAAGGTCGTCTTCTTACCTTAACACAGAAAGTTCAGAAG GTTTGTGATGAAATAGAGCATTTAATGGATGATGATGATGACATGGCTGAG
genomic: TGCGCAGGCTAAAAGGTCGTCTTCTTACCTTAACACAGAAAGTTCAGAAGgtgaacacaa ... aaacttgcagGTTTGTGATGAAATAGAGCATTTAATGGATGATGATGATGACATGGCTGAG
caaatttgaaaaagccctactaccataatttgattttggaggtcaaaacttgcagGTTTGTGATGAAATAGAGCATTTAATGGATGATGATGATGACATGGCTGAGATGTATTTGACTGAGAAAAAAGAAAGAGCTGAAGCTCATGCGTCAGAGG
atttgat putative branch site (score: 5)
ataatttgatttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgaacacaaaagactcttcaaatttgaaaaagccctactaccataatttgattttggaggtcaaaacttgcagGTTTGTGATGAAATAGAGCATTTAATGGATGATGATGATGACATGGCTGAGATGTATTTGACTGAGAAAAAAGAAAGAGCTGAAGCTCATGCGTCAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA