1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...caaattttcgaggcacattgctatggtttttgtcatcaccaacttgtgatttgtttgttgccttggacactcactctcatgtttgtaatatgatttgcagGTTGCAGTGGCTGTAATGGTCTCATGGTTGATATTCCGTAACCCAATATCATATATGAATGCTGTTGGATGCGGAATTACGCTTGTGGGCTGCACGTTTT
species | Arabidopsis thaliana |
transcript | AT1G77610.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: CATTCACTCCACAACTGCAGTCACATTCAACGTGGCTGGAAACCTTAAAG GTTGCAGTGGCTGTAATGGTCTCATGGTTGATATTCCGTAACCCAATAEST: gi|164221619|gb|ES037183.1|ES037183
genomic: CATTCACTCCACAACTGCAGTCACATTCAACGTGGCTGGAAACCTTAA-Ggtaactaaga ... tgatttgcagGTTGCAGTGGCTGTAATGGTCTCATGGTTGATATTCCGTAACCCAATA
EST: TCATTCACTCCACAACTGCAGTCACATTCAACGTGGCTGGAAACCTTAAG GTTGCAGTGGC
genomic: TCATTCACTCCACAACTGCAGTCACATTCAACGTGGCTGGAAACCTTAAGgtaactaaga ... tgatttgcagGTTGCAGTGGC
gtgatttgtttgttgccttggacactcactctcatgtttgtaatatgatttgcagGTTGCAGTGGCTGTAATGGTCTCATGGTTGATATTCCGTAACCCAATATCATATATGAATGCTGTTGGATGCGGAATTACGCTTGTGGGCTGCACGTTTT
cactcac putative branch site (score: 2)
tttgtaatatgattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| caaattttcgaggcacattgctatggtttttgtcatcaccaacttgtgatttgtttgttgccttggacactcactctcatgtttgtaatatgatttgcagGTTGCAGTGGCTGTAATGGTCTCATGGTTGATATTCCGTAACCCAATATCATATATGAATGCTGTTGGATGCGGAATTACGCTTGTGGGCTGCACGTTTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT
- - - - - - - - - - - - -gtttttg
- - - - - - - - - - - - - - - - - - caccaac
- - - - - - - - - - - - - - - - - - - - - - - - - -tgtttgt