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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtttgtttaccatctcagctgttttattaatttgctttctcttttataatgtagattgtggttgttggtgatacttgtgatgtgtctttaatcaagtaatttgctttatgcagGGTTCTAATCAGGCCCCATCCTGCAATCTGGCGCTTAGTTCATGGAATGGCCGTCATTTACTTAGTTGCACTTACTTTTTTGCTCTTTCAG

Basic information

species Arabidopsis thaliana
transcript AT1G15110.2
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G15110.1 (Arabidopsis thaliana), 3'ss of exon 4
lower sequence: GLYMA10G41430.1 (Glycine max), 3'ss of exon 4
gtttgtttaccatctcagctgttttattaatttgctttctcttttat--aatgtagattgtggttgttggtgatacttgtgatgtgtctttaatcaagtaatttgctttatgcagGGTTCTAATCAGGCCCCATCCTGCAATCTGGCGCTTAGTTCATGGAATGGCCGTCATTTACTTAGTTGCACTTACTTTTTTGCTCTTTCAG
                ||   |  ||||| ||   |||   ||      ||  |  | ||   ||  |  ||| |||  | |  ||  | |  |    | |||   || || ||||||||| || ||||| ||||||||||| |||||||| |||||||||||||| ||  ||||| | ||||| || || |||||||| ||||||
--------------agagtaataatattagttgagttttagttcagctgaagttgtagtgaattttctcttgagact-attacctgaatatttttttcttattattttcattcagGGTTCTTATTAGGCCACATCCTGCAATTTGGCGCTTGGTTCATGGAATGGCTGTTGTTTACCTTGTTGCCCTCACATTTTTGCTTTTTCAG

upper sequence: AT1G15110.1 (Arabidopsis thaliana), 3'ss of exon 4
lower sequence: GLYMA20G25830.2 (Glycine max), 3'ss of exon 6
gtttgtttaccatctcagctgttttattaatttgctttctcttttataatgtagattgtggttgttggtgatacttgtgatgtgtctttaatcaagtaatttgctttatgcagGGTTCTAATCAGGCCCCATCCTGCAATCTGGCGCTTAGTTCATGGAATGGCCGTCATTTACTTAGTTGCACTTACTTTTTTGCTCTTTCAG
      | |  || | || ||  || ||| ||    |    ||  ||| |  |  || |  |||    |  ||| ||  || | | |||  |  |     |   || || ||||||||| || ||||| ||||||||||| |||||||| |||||||| ||||| ||  | ||| ||||||| || || |||||||| ||||||
----agtaataatattagttgagtttttagttcagctgaagtt--atagtaaattttctc-ttgagaatattacctg-aatatatttttttttca-----tgttttcattcagGGTTCTTATTAGGCCACATCCTGCAATTTGGCGCTTGGTTCATGGCATGGCTGTTGTATACCTAGTTGCCCTCACATTTTTGCTTTTTCAG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tggttgttggtgatacttgtgatgtgtctttaatcaagtaatttgctttatgcagGGTTCTAATCAGGCCCCATCCTGCAATCTGGCGCTTAGTTCATGGAATGGCCGTCATTTACTTAGTTGCACTTACTTTTTTGCTCTTTCAG
                           ctttaat  putative branch site (score: 4)
                                         tttgcttt  putative PPT
                            tttaatcaagtaattt  TA-rich tract