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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtctgaaaattatttccatttatagaaaatatgttttaaagactaattttgcattaccttcctaatttgttatcaaaatattgtttaaaacagTTCTTATCGATGAAACTAGCAATTGTGAATCCAAGGCCGGATTTTGATATGGATGACATTTTTGCCAAAGAG

Basic information

species Arabidopsis thaliana
transcript AT4G34540.1
intron # 3
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116439660|gb|EG482252.1|EG482252
EST:     CTCTTCAGAGACAAATCGAG                         TTCTTATCGATGAAACTAGCAATTGTGAATCCAAGGCCGGATTTTGATATG
genomic: CTCTTCAGAGACAAATCGAGgtctgaaaat ... tttaaaacagTTCTTATCGATGAAACTAGCAATTGTGAATCCAAGGCCGGATTTTGATATG
EST: gi|116439716|gb|EG482308.1|EG482308
EST:     TGCTTGATGAAATCATTAACTATGTTCAGTCTCTTCAGAGACAAATCGAG                         TTCTTATCGATGAAACTAGCAATTGTGAATCCAAGGCCGGATTTTGATATG
genomic: TGCTTGATGAAATCATTAACTATGTTCAGTCTCTTCAGAGACAAATCGAGgtctgaaaat ... tttaaaacagTTCTTATCGATGAAACTAGCAATTGTGAATCCAAGGCCGGATTTTGATATG
EST: gi|116439694|gb|EG482286.1|EG482286
EST:     TGCTTGATGAAACCATTAACTATGTTCAGTCTCTTCAGAGACAAATCGAG                         TTCTTATCGATGAAACTAGCAATTGTGAATCCAAGGCCGGATTTTGATATG
genomic: TGCTTGATGAAATCATTAACTATGTTCAGTCTCTTCAGAGACAAATCGAGgtctgaaaat ... tttaaaacagTTCTTATCGATGAAACTAGCAATTGTGAATCCAAGGCCGGATTTTGATATG
EST: gi|116439749|gb|EG482341.1|EG482341
EST:     TGCTTGATGAAATCATTAACTATGTTCAGTCTCTTCAGAGACAAATCGAG                         TTCTTATCGATGAAACTAGCAATTGTGAATCCAAGGCCGGATTTTGATATG
genomic: TGCTTGATGAAATCATTAACTATGTTCAGTCTCTTCAGAGACAAATCGAGgtctgaaaat ... tttaaaacagTTCTTATCGATGAAACTAGCAATTGTGAATCCAAGGCCGGATTTTGATATG
EST: gi|116439649|gb|EG482241.1|EG482241
EST:     TGCTTGATGAAATCATTAACTATGTTCAGTCTCTTCAGAGACAAATCGAG                         TTCTTATCGATGAAACTAGCAATTGTGAATCCAAGGCCGGATTTTGATATG
genomic: TGCTTGATGAAATCATTAACTATGTTCAGTCTCTTCAGAGACAAATCGAGgtctgaaaat ... tttaaaacagTTCTTATCGATGAAACTAGCAATTGTGAATCCAAGGCCGGATTTTGATATG
EST: gi|116439760|gb|EG482352.1|EG482352
EST:     TGCTTGATGAAATCATTAACTATGTTCAGTCTCTTCAGAGACAAATCGAG                         TTCTTATCGATGAGACTAGCAATTGTGAATCCAAGGCCGGATTTTGATATG
genomic: TGCTTGATGAAATCATTAACTATGTTCAGTCTCTTCAGAGACAAATCGAGgtctgaaaat ... tttaaaacagTTCTTATCGATGAAACTAGCAATTGTGAATCCAAGGCCGGATTTTGATATG
EST: gi|116439738|gb|EG482330.1|EG482330
EST:     TCTTCAGAGACAAATCGAG                         TTCTTATCGATGAAACTAGCAATTGTGAATCCAAGGCCGGATTTTGATATG
genomic: TCTTCAGAGACAAATCGAGgtctgaaaat ... tttaaaacagTTCTTATCGATGAAACTAGCAATTGTGAATCCAAGGCCGGATTTTGATATG
EST: gi|125123050|gb|EL169499.1|EL169499
EST:     AGACAAATCGAG                         TTCTTATCGATGAAACTAGCAATTGTGAATCCAAGGCCGGATTTTGATATG
genomic: AGACAAATCGAGgtctgaaaat ... tttaaaacagTTCTTATCGATGAAACTAGCAATTGTGAATCCAAGGCCGGATTTTGATATG
EST: gi|116439638|gb|EG482230.1|EG482230
EST:     TTCAGAGACAAATCGAG                         TTCTTATCGATGAAACTAGCAATTGTGAATCCAAGGCCGGATTTTGATATG
genomic: TTCAGAGACAAATCGAGgtctgaaaat ... tttaaaacagTTCTTATCGATGAAACTAGCAATTGTGAATCCAAGGCCGGATTTTGATATG
EST: gi|116439683|gb|EG482275.1|EG482275
EST:     TGCTTGATGAAACCATTAACTATGTTCAGTCTCTTCAGAGACAAATCGAG                         TTCTTATCGATGAAACTAGCAATTGTGAATCCAAGGCCGGATTTTGATATG
genomic: TGCTTGATGAAATCATTAACTATGTTCAGTCTCTTCAGAGACAAATCGAGgtctgaaaat ... tttaaaacagTTCTTATCGATGAAACTAGCAATTGTGAATCCAAGGCCGGATTTTGATATG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aagactaattttgcattaccttcctaatttgttatcaaaatattgtttaaaacagTTCTTATCGATGAAACTAGCAATTGTGAATCCAAGGCCGGATTTTGATATGGATGACATTTTTGCCAAAGAG
                     tcctaat  putative branch site (score: 2)
                        taatttgttatcaaaa  TA-rich tract