1 5' 3' | 2 5' 3' | 3 5' 3' |
gtgagcatcagttcaagtttttgagatttctttggtgtttctgtttttacattgctggtttcttgatggttttaaaatagATGGGAGGCAAGGATGGGCTGAGTTTGCTCCGTATGATGCTATTCACGTCGGAGCAGCAGCACCGGAGATCCCAGAGGCGTTGATTGATCAGTTGAAGCC
species | Arabidopsis thaliana |
transcript | AT3G48330.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: TGCTGCTTCGCCATTTCTGAAAGAAGGGTCTCTTGCTGTTCATGTTGGTG ATGGGAGGCAAGGATGGGCTGAGTTTGCTCCGTATGATGCTATTCACGTCGEST: gi|116412577|gb|EG455169.1|EG455169
genomic: TGCTGCTTCGCCATTTCTGAAAGAAGGGTCTCTTGCTGTTCATGTTGGTGgtgagcatca ... tttaaaatagATGGGAGGCAAGGATGGGCTGAGTTTGCTCCGTATGATGCTATTCACGTCG
EST: TGCTGCTTCGCCATTTCTGAAAGAAGGGTCTCTTGCTGTTCATGTTGGTG ATGGGAGGCAAGGATGGGCTGAGTTTGCTCCGTATGATGCTATTCACGTCGEST: gi|116412593|gb|EG455185.1|EG455185
genomic: TGCTGCTTCGCCATTTCTGAAAGAAGGGTCTCTTGCTGTTCATGTTGGTGgtgagcatca ... tttaaaatagATGGGAGGCAAGGATGGGCTGAGTTTGCTCCGTATGATGCTATTCACGTCG
EST: TGCTGCTTCGCCATTTCTGAAAGAAGGGTCTCTTGCTGTTCATGTTGGTG ATGGGAGGCAAGGATGGGCTGAGTTTGCTCCGTATGATGCTATTCACGTCG
genomic: TGCTGCTTCGCCATTTCTGAAAGAAGGGTCTCTTGCTGTTCATGTTGGTGgtgagcatca ... tttaaaatagATGGGAGGCAAGGATGGGCTGAGTTTGCTCCGTATGATGCTATTCACGTCG
atttctttggtgtttctgtttttacattgctggtttcttgatggttttaaaatagATGGGAGGCAAGGATGGGCTGAGTTTGCTCCGTATGATGCTATTCACGTCGGAGCAGCAGCACCGGAGATCCCAGAGGCGTTGATTGATCAGTTGAAGCC
tcttgat putative branch site (score: 4)
atggttttaaaata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgagcatcagttcaagtttttgagatttctttggtgtttctgtttttacattgctggtttcttgatggttttaaaatagATGGGAGGCAAGGATGGGCTGAGTTTGCTCCGTATGATGCTATTCACGTCGGAGCAGCAGCACCGGAGATCCCAGAGGCGTTGATTGATCAGTTGAAGCC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC