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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttggattacttgtttcattcctacgcttgctttaaatatgtagagcaaattttgtttactaactacatctctgtttccagACGCCGATGGTCAGCTACATTAATGTGCATGCCATACTAGATGCAAGGAGACGTTTTGCCAAAGCTTCCACATCTAATGACCCAGAATCTTCTCAG

Basic information

species Arabidopsis thaliana
transcript AT3G04680.1
intron # 3
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|164109029|gb|ES161252.1|ES161252
EST:     CGACAATTGAGATGGATGGTGTCACGG-AACTGACTATACAGCAGATGAG                         ACGCCGATGGTCAGCTACATTAA
genomic: CGACAATTGAGATGGATGGTGTCACGGAAACTGACTATACAGCAGATGAGgttggattac ... ctgtttccagACGCCGATGGTCAGCTACATTAA






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cttgctttaaatatgtagagcaaattttgtttactaactacatctctgtttccagACGCCGATGGTCAGCTACATTAATGTGCATGCCATACTAGATGCAAGGAGACGTTTTGCCAAAGCTTCCACATCTAATGACCCAGAATCTTCTCAG
                               tactaac  putative branch site (score: 0)
                                          tctctgtttcc  putative PPT
                     aaattttgtttactaa  TA-rich tract