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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatactagccattacatttttatttattctaatcattacatgttttacaagagtgtcgattttataatatttttcttacatctcatataattacggttttaaattattatcttcaatattcgggcagAGATCGCAGAGCTCTTCTTTGTCGACACAACTCCTTTTGTAGATGCTTATTTCCTCAGTCCACAAGACCAAACTTACGACTGGAGCGGCGTATCACCGCG

Basic information

species Arabidopsis thaliana
transcript AT1G25230.1
intron # 3
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86018676|gb|DR314422.1|DR314422
EST:     ATCTATGGATAGCCGTTGGATTTGCATGAGATCCTTCATCGTTGACGCTG                         AGATCGCGGAS-TCTTCTTTGTTCGACACAACT
genomic: ATCTATGGATAGCCGTTGGATTTGCATGAGATCCTTCATCGTTGACGCTGgtatactagc ... attcgggcagAGATCGCAGAGCTCTTCTTTGT-CGACACAACT
EST: gi|124804094|gb|EH892105.1|EH892105
EST:     TGAGATCCTTCATCGTTGACGCTG                         AGATCGCAGAGCTCTTCTTTGTCGACACAACTCCTTTTGTAGATGCTTATT
genomic: TGAGATCCTTCATCGTTGACGCTGgtatactagc ... attcgggcagAGATCGCAGAGCTCTTCTTTGTCGACACAACTCCTTTTGTAGATGCTTATT
EST: gi|125247702|gb|EL261787.1|EL261787
EST:     TCGTTGACGCTG                         AGATCGCAGAGCTCTTCTTTGTCGACACAACTCCTTTTGTAGATGCTTATT
genomic: TCGTTGACGCTGgtatactagc ... attcgggcagAGATCGCAGAGCTCTTCTTTGTCGACACAACTCCTTTTGTAGATGCTTATT
EST: gi|124964834|gb|EL039069.1|EL039069
EST:     ATCTATGGATAGCCGTTGGATTTGCATGAGATCCTTCATCGTTGACGCTG                         AGATCGCAGAGCTCTTCTTTGTCGACACAACTCCTTTTGT
genomic: ATCTATGGATAGCCGTTGGATTTGCATGAGATCCTTCATCGTTGACGCTGgtatactagc ... attcgggcagAGATCGCAGAGCTCTTCTTTGTCGACACAACTCCTTTTGT
EST: gi|86018670|gb|DR314416.1|DR314416
EST:     ATCTATGGATAGCCGTTGGATTTGCATGAGATCCTTCATCGTTGACGCTG                         AGATCGCGGAGCTCTTCTTTGTCGACACAACTCCTTTTGTAGATGCTTATT
genomic: ATCTATGGATAGCCGTTGGATTTGCATGAGATCCTTCATCGTTGACGCTGgtatactagc ... attcgggcagAGATCGCAGAGCTCTTCTTTGTCGACACAACTCCTTTTGTAGATGCTTATT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttcttacatctcatataattacggttttaaattattatcttcaatattcgggcagAGATCGCAGAGCTCTTCTTTGTCGACACAACTCCTTTTGTAGATGCTTATTTCCTCAGTCCACAAGACCAAACTTACGACTGGAGCGGCGTATCACCGCG
 ttcttac  putative branch site (score: 2)
            atataattacggtttt  TA-rich tract