1 5' 3' | 2 5' 3' | 3 5' 3' |
gtactaataacctcactacttctcttagtttcttgtggaacaacttagaaacattttagggttttcttaatttgcagGTTTCTTGACAAATCGGCAATCCAAACACAAGACGACAAGCTGAACAAAGATGGGTCGCCGGTGGATGCATGGAAACTCTGCAGTATGCAACAAGTGGAG
species | Arabidopsis thaliana |
transcript | AT1G18880.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: ATCGCCAGTGATTTCAAGAACTCGAAATTGGGCCATACAGAGCAGTTCAG GTTTCTTGACAAATCGGCAATCCAAACACAAGACGACAAGCTGAACAAAGA
genomic: ATCGCCAGTGATTTCAAGAACTCGAAATTGGGCCATACAGAGCAGTTCAGgtactaataa ... taatttgcagGTTTCTTGACAAATCGGCAATCCAAACACAAGACGACAAGCTGAACAAAGA
tcttagtttcttgtggaacaacttagaaacattttagggttttcttaatttgcagGTTTCTTGACAAATCGGCAATCCAAACACAAGACGACAAGCTGAACAAAGATGGGTCGCCGGTGGATGCATGGAAACTCTGCAGTATGCAACAAGTGGAG
tcttaat putative branch site (score: 3)
ttttctt CT-rich tract
ttagaaacatttta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtactaataacctcactacttctcttagtttcttgtggaacaacttagaaacattttagggttttcttaatttgcagGTTTCTTGACAAATCGGCAATCCAAACACAAGACGACAAGCTGAACAAAGATGGGTCGCCGGTGGATGCATGGAAACTCTGCAGTATGCAACAAGTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG