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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

atatccttttttgtttcttttcaaaacctttcaagtcaaatttccgtcgctataatgaatgtgatttatttgaaattccttgaccgataattttacAGTGAGCAGAAGGAAATGTCTTACAGGGAAGATCCATATTTATCTGATAAATATCTTCAACCTCATCTTGATGAGTTGCCACCATCTATGAATCATCATC

Basic information

species Arabidopsis thaliana
transcript AT1G02750.1
intron # 3
splice site 3'
intron type U12 (go to U12 genes for details)

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86069468|gb|DR365225.1|DR365225
EST:     AGATGCATATGGTGGATCATATAACATCACATCATAGAGATGTCTTGAAG                         AGTGAGCAGAAGGAAATGTCTTACAGGGAAGATCCATATTTATCTGATAAA
genomic: AGATGCATATGGTGGATCATATAACATCACATCATAGAGATGTCTTGAAGatatcctttt ... ataattttacAGTGAGCAGAAGGAAATGTCTTACAGGGAAGATCCATATTTATCTGATAAA
EST: gi|86088347|gb|DR384106.1|DR384106
EST:     AGATGCATATGGTGGATCATATAACATCACATCATAGAGATGTCTTGAAG                         AGTGAGCAGAAGGAAATGTCTTACAGGGAAGATCCATATTTATCTGATAAA
genomic: AGATGCATATGGTGGATCATATAACATCACATCATAGAGATGTCTTGAAGatatcctttt ... ataattttacAGTGAGCAGAAGGAAATGTCTTACAGGGAAGATCCATATTTATCTGATAAA
EST: gi|86069469|gb|DR365226.1|DR365226
EST:     AGATGCATATGGTGGATCATATAACATCACATCATAGAGATGTCTTGAAG                         AGTGAGCAGAAGGAAATGTCTTACAGGGAAGATCCATATTTATCTGATAAA
genomic: AGATGCATATGGTGGATCATATAACATCACATCATAGAGATGTCTTGAAGatatcctttt ... ataattttacAGTGAGCAGAAGGAAATGTCTTACAGGGAAGATCCATATTTATCTGATAAA
EST: gi|19878833|gb|AU239664.1|AU239664
EST:     AGATGCATATGGTGGATCATATAACATCACATCATAGAGATGTCTTGAAG                         AGTGAGCAGAAGGAAATGTCTTACAGGGAAGATCCATATTTATCTGATAAA
genomic: AGATGCATATGGTGGATCATATAACATCACATCATAGAGATGTCTTGAAGatatcctttt ... ataattttacAGTGAGCAGAAGGAAATGTCTTACAGGGAAGATCCATATTTATCTGATAAA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttccgtcgctataatgaatgtgatttatttgaaattccttgaccgataattttacAGTGAGCAGAAGGAAATGTCTTACAGGGAAGATCCATATTTATCTGATAAATATCTTCAACCTCATCTTGATGAGTTGCCACCATCTATGAATCATCATC
 ttccttgac  putative branch site 
         tataatgaatgtgatt  TA-rich tract