1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' | 20 5' 3' |
21 5' 3' | 22 5' 3' |
gtataatctgccactatctttaccttattttgatcacaaactgttattaatatgctcatctccttttatgtgtgtttgttgtagGTATCTTGTTGTATGAGATGCTTTATGGTCGCACACCTTTCAGGGGTAAGAATAGGCAAAAGACATTTGCCAACATCTTGCACAAAGATCTCACTTTCCC
species | Arabidopsis thaliana |
transcript | AT5G58140.2 |
intron # | 20 |
splice site | 3' |
intron type | U2 |
EST: TATTGATTGGTGGGCACTGG GTATCTTGTTGTATGAGATGCTTTATGGTCGCACACCTTTCAGGGGTAAGAEST: gi|125115453|gb|EL165416.1|EL165416
genomic: TATTGATTGGTGGGCACTGGgtataatctg ... tttgttgtagGTATCTTGTTGTATGAGATGCTTTATGGTCGCACACCTTTCAGGGGTAAGA
EST: ATCAC-GGTGCTGGTCATACAAGTGCTATTGATTGGTGGGCACTGG GTATCTTGTTGTAEST: gi|124981268|gb|EL054147.1|EL054147
genomic: ATCACGGGTGCTGGTCATACAAGTGCTATTGATTGGTGGGCACTGGgtataatctg ... tttgttgtagGTATCTTGTTGTA
EST: ATTGATTGGTGGGCACTGG GTATCTTGTTGTATGAGATGCTTTATGGTCGCACACCTTTCAGGGGTAAGA
genomic: ATTGATTGGTGGGCACTGGgtataatctg ... tttgttgtagGTATCTTGTTGTATGAGATGCTTTATGGTCGCACACCTTTCAGGGGTAAGA
ttgatcacaaactgttattaatatgctcatctccttttatgtgtgtttgttgtagGTATCTTGTTGTATGAGATGCTTTATGGTCGCACACCTTTCAGGGGTAAGAATAGGCAAAAGACATTTGCCAACATCTTGCACAAAGATCTCACTTTCCC
tattaat putative branch site (score: 2)
aaactgttattaatat TA-rich tract