1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' |
gtctgaattatttttgaggatagtgatgatctctagacattagtgtatgtctggttttggtattaatgtgttgttgttgtttgttctgaatcaattgttgtagGTTGGTATTTGTGAGCTTCCATTTCACCCTATTAGCTCTGAGGAGATTGGAGGCGTTGGTGGAAC
species | Arabidopsis thaliana |
transcript | AT3G24170.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: GGAGTGGCGGTGTTCGTGCTGCTAGGTTTTCGGCTAATCATGGCGCTAAG GTTGGTATTTGTGAGCTTCCATTTCACCCTATTAGCTCTGAGGAGATTGGAEST: gi|116428975|gb|EG471567.1|EG471567
genomic: GGAGTGGCGGTGTTCGTGCTGCTAGGTTTTCGGCTAATCATGGCGCTAAGgtctgaatta ... attgttgtagGTTGGTATTTGTGAGCTTCCATTTCACCCTATTAGCTCTGAGGAGATTGGA
EST: GGAGTGGCGGTGTTCGTGCTGCTAGGTTTTCGGCTAATCATGGCGCTAAG GTTGGTATTTGTGAGCTTCCATTTCACCCTATTAGCTCTGAGGAGATTGGAEST: gi|125319978|gb|EL334063.1|EL334063
genomic: GGAGTGGCGGTGTTCGTGCTGCTAGGTTTTCGGCTAATCATGGCGCTAAGgtctgaatta ... attgttgtagGTTGGTATTTGTGAGCTTCCATTTCACCCTATTAGCTCTGAGGAGATTGGA
EST: CGGCTAATCATGGCGCTAAG GTTGGTATTTGTGAGCTTCCATTTCACCCTATTAGCTCTGAGGAGATTGGAEST: gi|116462895|gb|EG505487.1|EG505487
genomic: CGGCTAATCATGGCGCTAAGgtctgaatta ... attgttgtagGTTGGTATTTGTGAGCTTCCATTTCACCCTATTAGCTCTGAGGAGATTGGA
EST: GGAGTGGCGGTGTTCGTGCTGCTAGGTTTTCGGCTAATCATGGCGCTAAG GTTGGTATTTGTGAGCTTCCATTTCACCCTATTAGCTCTGAGGAGATTGGAEST: gi|116422003|gb|EG464595.1|EG464595
genomic: GGAGTGGCGGTGTTCGTGCTGCTAGGTTTTCGGCTAATCATGGCGCTAAGgtctgaatta ... attgttgtagGTTGGTATTTGTGAGCTTCCATTTCACCCTATTAGCTCTGAGGAGATTGGA
EST: GGAGTGGCGGTGTTCGTGCTGCTAGGTTTTCGGCTAATCATGGCGCTAAG GTTGGTATTTGTGAGCTTCCATTTCACCCTATTAGCTCTGAGGAGATTGGA
genomic: GGAGTGGCGGTGTTCGTGCTGCTAGGTTTTCGGCTAATCATGGCGCTAAGgtctgaatta ... attgttgtagGTTGGTATTTGTGAGCTTCCATTTCACCCTATTAGCTCTGAGGAGATTGGA
gtctggttttggtattaatgtgttgttgttgtttgttctgaatcaattgttgtagGTTGGTATTTGTGAGCTTCCATTTCACCCTATTAGCTCTGAGGAGATTGGAGGCGTTGGTGGAAC
tattaat putative branch site (score: 2)
tattaatgt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtctgaattatttttgaggatagtgatgatctctagacattagtgtatgtctggttttggtattaatgtgttgttgttgtttgttctgaatcaattgttgtagGTTGGTATTTGTGAGCTTCCATTTCACCCTATTAGCTCTGAGGAGATTGGAGGCGTTGGTGGAAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA