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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttagtttttagcttaatcttctttagctctgtgttattcacttttgtagtaacttaaaacctttgatttttctctctagTTCCGGATCTCGAGACAATGAACTTTAGAGTTCTATTTAGAACAGACAAGTACGAGATTAGACAAGTTGAG

Basic information

species Arabidopsis thaliana
transcript AT3G10130.1
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|125212829|gb|EL227783.1|EL227783
EST:     CTACTAATCTTGAAGAAGCTTTCATGTCTG                         TTCCGGATCTCGAGACAATGAACTTTAGAGTTCTATTTAGAACAGACAAGT
genomic: CTACTAATCTTGAAGAAGCTTTCATGTCTGgttagttttt ... ttctctctagTTCCGGATCTCGAGACAATGAACTTTAGAGTTCTATTTAGAACAGACAAGT






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

agctctgtgttattcacttttgtagtaacttaaaacctttgatttttctctctagTTCCGGATCTCGAGACAATGAACTTTAGAGTTCTATTTAGAACAGACAAGTACGAGATTAGACAAGTTGAG
                                   cctttgatttttctct  CT-rich tract
                         taacttaaaa  TA-rich tract