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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgaaaccattatcttcttcttttttttctttttttttttttttttttgcttaaatcctgttttagcagcagagtttgagaaatttgatctttcttcagGTTGTGGAAAGTCCTTGTGATGCCATTCTTGTTGCGGATGGAGCTCCGTTATCAGCATTTCAGTATTTTGAGAATGTTAGGAACTTTCTTGTTGCTATAC

Basic information

species Arabidopsis thaliana
transcript AT2G47500.1
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|164002249|gb|ES122535.1|ES122535
EST:     TTNTCCTTTGTAAAGTCCTCAATAAGGTTCAACCTGGAGCTGTCTCAAAG                         GTTGTGGAAAGTCCTTGTGATGCCATTCTTGTTGCGGATGGAGCTCC
genomic: TTATCCTTTGTAAAGTCCTCAATAAGGTTCAACCTGGAGCTGTCTCAAAGgtgaaaccat ... ctttcttcagGTTGTGGAAAGTCCTTGTGATGCCATTCTTGTTGCGGATGGAGCTCC






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttttgcttaaatcctgttttagcagcagagtttgagaaatttgatctttcttcagGTTGTGGAAAGTCCTTGTGATGCCATTCTTGTTGCGGATGGAGCTCCGTTATCAGCATTTCAGTATTTTGAGAATGTTAGGAACTTTCTTGTTGCTATAC
                                      atttgat  putative branch site (score: 5)
                                       tttgatctttcttc  CT-rich tract
                                    aaatttgat  TA-rich tract