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gtaatatataatagggtttttggaaatttcaagtcttgcgtcgagtatgataatttttgagatttataggcaatttgttgatccctttgcttgagaaaagttactgctttttatgttcttaactaatcagattttaaagatgtgtattatatgatcctcttggtcttttgtttatgtaatgcagGACATGTGTGGATTACCTGATATAGAAGACTCTCCTTATAAGAAGACTAATGGAACTGCTTCATCTA
species | Arabidopsis thaliana |
transcript | AT1G05900.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: ATTTGGAGCCTGTAAAGAAATGTTCCGCCAGAGAAACCAAGGCCCGCAAG GACATGTGTGGATTACCTGATATAGAAGACTCTCCTTATAAGAAGACTAATEST: gi|86044415|gb|DR340170.1|DR340170
genomic: ATTTGGAGCCTGTAAAGAAATGTTCCGCCAGAGAAACCAAGGCCCGCAAGgtaatatata ... tgtaatgcagGACATGTGTGGATTACCTGATATAGAAGACTCTCCTTATAAGAAGACTAAT
EST: ATTTGGAGCCTGTAAAGAAATGTTCCGCCAGAGAAACCAAGGCCCGCAAG GACATGTGTGGATTACCTGATATAGAAGACTCTCCTTATAAGAAGACTAATEST: gi|86044414|gb|DR340169.1|DR340169
genomic: ATTTGGAGCCTGTAAAGAAATGTTCCGCCAGAGAAACCAAGGCCCGCAAGgtaatatata ... tgtaatgcagGACATGTGTGGATTACCTGATATAGAAGACTCTCCTTATAAGAAGACTAAT
EST: ATTTGGAGCCTGTAAAGAAATGTTCCGCCAGAGAAACCAAGGCCCGCAAG GACATGTGTGGATTACCTGATATAGAAGACTCTCCTTATAAGA-GACTAATEST: gi|86044416|gb|DR340171.1|DR340171
genomic: ATTTGGAGCCTGTAAAGAAATGTTCCGCCAGAGAAACCAAGGCCCGCAAGgtaatatata ... tgtaatgcagGACATGTGTGGATTACCTGATATAGAAGACTCTCCTTATAAGAAGACTAAT
EST: ATTTGGAGCCTGTAAAGAAATGTTCCGCCAGAGAAACCAAGGCCCGCAAG GACATGTGTGGATTACCTGATATAGAAGACTCTCCTTATAAGAAGACTAAT
genomic: ATTTGGAGCCTGTAAAGAAATGTTCCGCCAGAGAAACCAAGGCCCGCAAGgtaatatata ... tgtaatgcagGACATGTGTGGATTACCTGATATAGAAGACTCTCCTTATAAGAAGACTAAT
gattttaaagatgtgtattatatgatcctcttggtcttttgtttatgtaatgcagGACATGTGTGGATTACCTGATATAGAAGACTCTCCTTATAAGAAGACTAATGGAACTGCTTCATCTA
ttttgtttatgtaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaatatataatagggtttttggaaatttcaagtcttgcgtcgagtatgataatttttgagatttataggcaatttgttgatccctttgcttgagaaaagttactgctttttatgttcttaactaatcagattttaaagatgtgtattatatgatcctcttggtcttttgtttatgtaatgcagGACATGTGTGGATTACCTGATATAGAAGACTCTCCTTATAAGAAGACTAATGGAACTGCTTCATCTA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG