Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaactaacacattttacattcatgtgctttgtctaaagtcacatacttggccatttataatcttgagatatatatttgtttgggttaaacatggcatatctttttgtttctatgcattttttcttgcttaagaatctctttagTAACTTCTTTGCTCAGGGTTATCTCCGGACACTGGTGGGTGGAAGCAAACACTTCAGGTTACCTTCTTGATCACTGTTTGCTTTGTTGCGCTGGCACAAT

Basic information

species Arabidopsis thaliana
transcript AT1G05790.2
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|19876526|gb|AU237357.1|AU237357
EST:     TCTCGCCAA-TATGTTTCCCGTGATGGATTGCCAAGGAATTGCGTTTTAG                         TAACTTCTTTGCTCA
genomic: TCTCGCCAAATATGTTTCCCGTGATGGATTGCCAAGGAATTGCGTTTTAGgtaaactaac ... atctctttagTAACTTCTTTGCTCA






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

acatggcatatctttttgtttctatgcattttttcttgcttaagaatctctttagTAACTTCTTTGCTCAGGGTTATCTCCGGACACTGGTGGGTGGAAGCAAACACTTCAGGTTACCTTCTTGATCACTGTTTGCTTTGTTGCGCTGGCACAAT
                                              tctcttt  CT-rich tract
       atatctttttgttt  TA-rich tract