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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagtcatacgtcttccaagcacttgggtttcactttcaccagtttgatgtttgctctaactaaagataattaatattgtgaacaaaacacagGTTGGGATACATCCATCTTCTGCAGAGGAATTTGTGACAATGCGCAGTGTGACCAGACGCATTGCCCACAAACCCAAACCTAAGACAAATCTATGAACCG

Basic information

species Arabidopsis thaliana
transcript AT3G24170.3
intron # 16
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116462906|gb|EG505498.1|EG505498
EST:     TTGCAATTGCGCTCAAGTGTGGAGCAACCAAAGCACAATTTGATAGCACG                         GTTGGGATACATCCATCTTCTGCAGAGGAATTTGTGACAATGCGCAGTGTG
genomic: TTGCAATTGCGCTCAAGTGTGGAGCAACCAAAGCACAATTTGATAGCACGgtaagtcata ... caaaacacagGTTGGGATACATCCATCTTCTGCAGAGGAATTTGTGACAATGCGCAGTGTG
EST: gi|86085355|gb|DR381114.1|DR381114
EST:     TTGCAATTGCGCTCAAGTGTGGAGCAACCAAAGCACAATTTGATAGCACG                         GTTGGGATACATCCATCTTCTGCAGAGGAATTTGTGACAATGCGCAGTGTG
genomic: TTGCAATTGCGCTCAAGTGTGGAGCAACCAAAGCACAATTTGATAGCACGgtaagtcata ... caaaacacagGTTGGGATACATCCATCTTCTGCAGAGGAATTTGTGACAATGCGCAGTGTG
EST: gi|116429472|gb|EG472064.1|EG472064
EST:     TTGCAATTGCGCTCAAGTGTGGAGCAACCAAAGCACAATTTGATAGCACG                         GTTGGGATACATCCATTTTTTGCAGAGGAATTTGTGACAATGCGCAGTGTG
genomic: TTGCAATTGCGCTCAAGTGTGGAGCAACCAAAGCACAATTTGATAGCACGgtaagtcata ... caaaacacagGTTGGGATACATCCATCTTCTGCAGAGGAATTTGTGACAATGCGCAGTGTG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

accagtttgatgtttgctctaactaaagataattaatattgtgaacaaaacacagGTTGGGATACATCCATCTTCTGCAGAGGAATTTGTGACAATGCGCAGTGTGACCAGACGCATTGCCCACAAACCCAAACCTAAGACAAATCTATGAACCG
                       taaagataattaatat  TA-rich tract