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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaactctctaaaacacaactttgatttttttaagtcaaaacagagcctctctgaatcattgctactgcaatttattgacttcagATGTAGACACGCGCTGCAGAAGGTTCTAGAATCTCGGAATCTCTTCTTCGATCTGACAAGTGAGACTGATATAGTATAACACAAGACATGAACAGGTTTC

Basic information

species Arabidopsis thaliana
transcript AT1G05790.2
intron # 13
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|19743046|gb|AU228399.1|AU228399
EST:     AAAGAAATTATGGTTTCTCCATCAATGTTCCTTGATCATCTTCCTTGGAG                         ATGTAGACACGCGCTGCAGAAGGTTCTAGAATCTCG-AATCTCTTCTTCGA
genomic: AAAGAAATTATGGTTTCTCCATCAATGTTCCTTGATCATCTTCCTTGGAGgtaactctct ... ttgacttcagATGTAGACACGCGCTGCAGAAGGTTCTAGAATCTCGGAATCTCTTCTTCGA






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttaagtcaaaacagagcctctctgaatcattgctactgcaatttattgacttcagATGTAGACACGCGCTGCAGAAGGTTCTAGAATCTCGGAATCTCTTCTTCGATCTGACAAGTGAGACTGATATAGTATAACACAAGACATGAACAGGTTTC
                                           tattgac  putative branch site (score: 2)
                                       aatttattga  TA-rich tract