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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

atatcctttttcatgaatggatatacttcttaatgttttgattagatagagagagagagatcattttcatgtttcagtttcatattccttaacattttttggtacGTTAGAGATCAGGAATAGCTCTCAAAAGGGTCTAAGTGTACCGGATGCAAGTCTTGTTCCAGTCTCTTCAACATTTGATGTTATTGATCTAATGAAAACT

Basic information

species Arabidopsis thaliana
transcript AT2G47500.1
intron # 12
splice site 3'
intron type U12 (go to U12 genes for details)

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116446238|gb|EG488830.1|EG488830
EST:     TACAATGAGCAAGTTAGAGACCTTTTGGTTACTGATGGAAGCAATAAAAG                         A
genomic: TACAATGAGCAAGTTAGAGACCTTTTGGTTACTGATGGAAGCAATAAAAGatatcctttt ... tttttggtac-
EST: gi|116446238|gb|EG488830.1|EG488830
EST:     TACAATGAGCAAGTTAGAGACCTTTTGGTTACTGATGGAAGCAATAAAAG                         A
genomic: TACAATGAGCAAGTTAGAGACCTTTTGGTTACTGATGGAAGCAATAAAAGatatcctttt ... tttttggtac-


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gagagagagatcattttcatgtttcagtttcatattccttaacattttttggtacGTTAGAGATCAGGAATAGCTCTCAAAAGGGTCTAAGTGTACCGGATGCAAGTCTTGTTCCAGTCTCTTCAACATTTGATGTTATTGATCTAATGAAAACT
 ttccttaac  putative branch site 
                                          catttttt  putative PPT
                                      ttaacatttttt  TA-rich tract