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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttctcataaagcctctctttcttcattcatactgtcaaaaatcaagatttcaagttgatatctagagaattggcatttcattagaacttttacctgcagAAATATGCAGAAGAGATGAGGACATCACTAATGGATAAAAACTGGAAAATCCCGATCACCGTGTGCTGGGGACAACGAGATAGGTGGTTAAGCTATGAAG

Basic information

species Arabidopsis thaliana
transcript AT4G12830.1
intron # 11
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|124987555|gb|EL060006.1|EL060006
EST:     TAAGCAGGTCCATGAAGAAAGAACTTAAG                         AAATATGCAGAAGAGATGAGGACATCACTAATGGATAAAAACTGGAAAATC
genomic: TAAGCAGGTCCATGAAGAAAGAACTTAAGgttctcataa ... ttacctgcagAAATATGCAGAAGAGATGAGGACATCACTAATGGATAAAAACTGGAAAATC
EST: gi|86084581|gb|DR380340.1|DR380340
EST:     CTGGTTTTGCACTTAATGCCATAAGCAGGTCCATGAAGAAAGWACTTAAG                         AAATATGCAGAAGAGATGAGGACATCACTAATGGATAAAAACTGGAAAATC
genomic: CTGGTTTTGCACTTAATGCCATAAGCAGGTCCATGAAGAAAGAACTTAAGgttctcataa ... ttacctgcagAAATATGCAGAAGAGATGAGGACATCACTAATGGATAAAAACTGGAAAATC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

agatttcaagttgatatctagagaattggcatttcattagaacttttacctgcagAAATATGCAGAAGAGATGAGGACATCACTAATGGATAAAAACTGGAAAATCCCGATCACCGTGTGCTGGGGACAACGAGATAGGTGGTTAAGCTATGAAG
        agttgat  putative branch site (score: 5)
                                          cttttacct  putative PPT
                              atttcatta  TA-rich tract