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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaatgtaattgaaatgccttgctgttattctctagtgattgaatttaacctgaaggatctatcttgctctttgtagAAGAGGTATTTTCTGATATGCAGCCATTGATCCGTTCTGTTCTTGATGGATACAATGTCTGCATATTTGCATATGGTCAAACTGGATCAGGAAAAACATT

Basic information

species Arabidopsis thaliana
transcript AT2G47500.1
intron # 10
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116446260|gb|EG488852.1|EG488852
EST:     ACTCAAATCCTTCACTTTCAACAAAGTCTTTGGCCCATCTGCAACTCAAG                         AAGAGGTATTTTCTGATATGCAGCCATTGATCCGTTCTGTTCTTGATGGAT
genomic: ACTCAAATCCTTCACTTTCAACAAAGTCTTTGGCCCATCTGCAACTCAAGgtaatgtaat ... ctctttgtagAAGAGGTATTTTCTGATATGCAGCCATTGATCCGTTCTGTTCTTGATGGAT
EST: gi|116446238|gb|EG488830.1|EG488830
EST:     ACTCAAATCCTTCACTTTCAACAAAGTCTTTGGCCCATCTGCAACTCAAG                         AAGAGGTATTTTCTGATATGCAGCCATTGATCCGTTCTGTTCTTGATGGAT
genomic: ACTCAAATCCTTCACTTTCAACAAAGTCTTTGGCCCATCTGCAACTCAAGgtaatgtaat ... ctctttgtagAAGAGGTATTTTCTGATATGCAGCCATTGATCCGTTCTGTTCTTGATGGAT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctgttattctctagtgattgaatttaacctgaaggatctatcttgctctttgtagAAGAGGTATTTTCTGATATGCAGCCATTGATCCGTTCTGTTCTTGATGGATACAATGTCTGCATATTTGCATATGGTCAAACTGGATCAGGAAAAACATT
                     atttaac  putative branch site (score: 3)
                                    tctatcttgctcttt  putative PPT
                attgaatttaa  TA-rich tract