1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...ttgtgaaatttcggacctagtctcttattccataactatgaacaatgcatatgcaatttcaagattttagctgtcaataactttgaatctctttttgcagGCGTGGGGTTTGCAGATGCAAAAGTTGGTGTTAACAAACCAGAATTGCTTCCTAAAGAGTTCACTTCTGTTATAGATGTTGCTGATTTCCTCTCTAATGG
species | Arabidopsis thaliana |
transcript | AT5G52970.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: TTTGGTGTTCTCTGGAGCTCTTGCTCTCGGTTTATCTCTATCAG GCGTGGGGTTTGCAGATGCAAAAGTTGGTGTTAACAAACCAGAATTGCTTCEST: gi|125241782|gb|EL255867.1|EL255867
genomic: TTTGGTGTTCTCTGGAGCTCTTGCTCTCGGTTTATCTCTATCAGgtacgtttct ... ctttttgcagGCGTGGGGTTTGCAGATGCAAAAGTTGGTGTTAACAAACCAGAATTGCTTC
EST: TCTCAGTTTGGTGTTCTCTGGAGCTCTTGCTCTCGGTTTATCTCTATCAG GCGTGGGGTTTGCAGATGCAAAAGTTGGTGTTAACAAAEST: gi|124755672|gb|EH845802.1|EH845802
genomic: TCTCAGTTTGGTGTTCTCTGGAGCTCTTGCTCTCGGTTTATCTCTATCAGgtacgtttct ... ctttttgcagGCGTGGGGTTTGCAGATGCAAAAGTTGGTGTTAACAAA
EST: AGCTCTTGCTCTCGGTTTATCTCTATCAG GCGTGGGGTTTGCAGATGCAAAAGTTTGGTGTTAACAAACCAGAATTGCTT
genomic: AGCTCTTGCTCTCGGTTTATCTCTATCAGgtacgtttct ... ctttttgcagGCGTGGGGTTTGCAGATGCAAAAGTT-GGTGTTAACAAACCAGAATTGCTT
tgcatatgcaatttcaagattttagctgtcaataactttgaatctctttttgcagGCGTGGGGTTTGCAGATGCAAAAGTTGGTGTTAACAAACCAGAATTGCTTCCTAAAGAGTTCACTTCTGTTATAGATGTTGCTGATTTCCTCTCTAATGG
caataac putative branch site (score: 2)
tctctttttgc putative PPT
aatttcaagatttta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttgtgaaatttcggacctagtctcttattccataactatgaacaatgcatatgcaatttcaagattttagctgtcaataactttgaatctctttttgcagGCGTGGGGTTTGCAGATGCAAAAGTTGGTGTTAACAAACCAGAATTGCTTCCTAAAGAGTTCACTTCTGTTATAGATGTTGCTGATTTCCTCTCTAATGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT
- - - - - - - - - - - - - - -ccataac
- - - - - - - - - - - - - - - - - - - - aacaatg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - caataac