1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
...gaagacacttacatccacttatttcctagaccttatctcgagttttggttgtgtgtttgataaggaaggaatttgattgtatgcttcaaataattttcagGGAAAGATGAATTTGGTGAATATTAAAGATGTATTGACTTCTTTCAGTCCTGCACTAGATTATCTCGCTCTTAGCACCGGAGATGGCCGTATCAAG
species | Arabidopsis thaliana |
transcript | AT5G11240.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: AAGCTGAAGAAAGTTGTACTTTGAAGCCTGCTTCTCCTTCGATTAGTCTG GGAAANATGAATTTGGTGAATATTAAAGATGTATTGACTTCTTTCAGTCCTEST: gi|19878456|gb|AU239287.1|AU239287
genomic: AAGCTGAAGAAAGTTGTACTTTGAAGCCTGCTTCTCCTTCGATTAGTCTGgttagttgcc ... taattttcagGGAAAGATGAATTTGGTGAATATTAAAGATGTATTGACTTCTTTCAGTCCT
EST: AAGCTGAAGAAAGTTGTACTTTGAAGCCTGCTTCTCCTTCGATTAGTCTG GGAAAGATGAATTTGGTGAATATTAAAGATGTATTGACTTCTTTCAGTCCTEST: gi|86073865|gb|DR369622.1|DR369622
genomic: AAGCTGAAGAAAGTTGTACTTTGAAGCCTGCTTCTCCTTCGATTAGTCTGgttagttgcc ... taattttcagGGAAAGATGAATTTGGTGAATATTAAAGATGTATTGACTTCTTTCAGTCCT
EST: AAGCTGAAGAAAGTTGTACTTTGAAGCCTGCTTCTCCTTCGATTAGTCTG GGAAAGATGAATTTGGTGAATATTAAAGATGTATTGACTTCTTTCAGTCCT
genomic: AAGCTGAAGAAAGTTGTACTTTGAAGCCTGCTTCTCCTTCGATTAGTCTGgttagttgcc ... taattttcagGGAAAGATGAATTTGGTGAATATTAAAGATGTATTGACTTCTTTCAGTCCT
tggttgtgtgtttgataaggaaggaatttgattgtatgcttcaaataattttcagGGAAAGATGAATTTGGTGAATATTAAAGATGTATTGACTTCTTTCAGTCCTGCACTAGATTATCTCGCTCTTAGCACCGGAGATGGCCGTATCAAG
atttgat putative branch site (score: 5)
ttttc putative PPT
ttcaaataattttca TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gaagacacttacatccacttatttcctagaccttatctcgagttttggttgtgtgtttgataaggaaggaatttgattgtatgcttcaaataattttcagGGAAAGATGAATTTGGTGAATATTAAAGATGTATTGACTTCTTTCAGTCCTGCACTAGATTATCTCGCTCTTAGCACCGGAGATGGCCGTATCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG
gaagaca
- - - -cttacat
- - - - - - - ccactta
- - - - - - - - - - - - -ctagacc
- - - - - - - - - - - - - - - - - - - - -gttttgg
- - - - - - - - - - - - - - - - - - - - - - - - - - -tgtttga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gaaggaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -cttcaaa