Sequence
atgc intronic sequence ATGC exonic sequence...aatccaaaaccagtcatatgataggcgccttttctataaaaccgttttatgtatttggattgatcttttaacgatatatatgcatatgatgttgaaatagGAGGATGATGGGCAAGGAGGGAGGAGGAAGAAGAGCATAAAGGAGAAAATTAAAGAGAAGTTCGGTAGCGGCAAACACAAGGACGAACAAACACCAGCGA
Basic information
species | Arabidopsis thaliana |
transcript | AT2G21490.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|125283582|gb|EL297667.1|EL297667EST: CGTCGGTCTGGAAGTTCATCTAGCTCTAGCTCG GAGGATGATGGGCAAGGAGGGAGGAGGAAGAAGAGC
genomic: CGTCGGTCTGGAAGTTCATCTAGCTCTAGCTCGgtgagattct ... gttgaaatagGAGGATGATGGGCAAGGAGGGAGGAGGAAGAAGAGC
EST:
gi|152034221|gb|BP822349.2|BP822349EST: GCATCTTCGCTCGGTCTGGAAGTTCATCTAGCTCTAGCTCG GAGGATGATGGGCAAGGAGGGAGGAGGAAGAAGAGCATAAAGGAGAAAATT
genomic: GCATCTTCG-TCGGTCTGGAAGTTCATCTAGCTCTAGCTCGgtgagattct ... gttgaaatagGAGGATGATGGGCAAGGAGGGAGGAGGAAGAAGAGCATAAAGGAGAAAATT
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tttatgtatttggattgatcttttaacgatatatatgcatatgatgttgaaatagGAGGATGATGGGCAAGGAGGGAGGAGGAAGAAGAGCATAAAGGAGAAAATTAAAGAGAAGTTCGGTAGCGGCAAACACAAGGACGAACAAACACCAGCGA
ttttaac putative branch site (score: 2)
ttttaacgatatatat TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
aatccaaaaccagtcatatgataggcgccttttctataaaaccgttttatgtatttggattgatcttttaacgatatatatgcatatgatgttgaaatagGAGGATGATGGGCAAGGAGGGAGGAGGAAGAAGAGCATAAAGGAGAAAATTAAAGAGAAGTTCGGTAGCGGCAAACACAAGGACGAACAAACACCAGCGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT
- -ccaaaac
- - - - - - - - - - - - - -ccttttc
- - - - - - - - - - - - - - - - - - taaaacc
- - - - - - - - - - - - - - - - - - - - - - - - - -tatttgg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aacgata