1 5' 3' | 2 5' 3' | 3 5' 3' |
...tctctttgactttctgaaactatctcttatatagtaagttgagttcttgtgctgctttgtgtttgtagtatgttctcatatggattttgctttgtgttagGTTTGATTGGCATGTGGTGCAATTCATCATCGTCTGCTTGCCATCTGTAG
species | Arabidopsis thaliana |
transcript | AT1G80700.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: GAACAAATTTGG GTTTGATTGGCATGTGGTGCAATTCATCATCGTCTGCTTGCCATCEST: gi|164151266|gb|EL994054.1|EL994054
genomic: GAACAAATTTGGgtaatttcta ... tttgtgttagGTTTGATTGGCATGTGGTGCAATTCATCATCGTCTGCTTGCCATC
EST: ACCGCTGCGAAGATCTTGTTCACTGAACCACCCAAGAAGAACAAATTTGG GTTTGTTTGGCEST: gi|86056308|gb|DR352065.1|DR352065
genomic: ACCGCTGCGAAGATCTTGTTCACTGAACCACCCAAGAAGAACAAATTTGGgtaatttcta ... tttgtgttagGTTTGATTGGC
EST: ACCGCTGCGAAGATCTTGTTCACTGAACCACCCAAGAAGAACAAATTTGG GTTTGATTGGCATGTGGTGCAATTCATCATCGTCTGCTTGCCATCTGTAG
genomic: ACCGCTGCGAAGATCTTGTTCACTGAACCACCCAAGAAGAACAAATTTGGgtaatttcta ... tttgtgttagGTTTGATTGGCATGTGGTGCAATTCATCATCGTCTGCTTGCCATCTGTAG
cttgtgctgctttgtgtttgtagtatgttctcatatggattttgctttgtgttagGTTTGATTGGCATGTGGTGCAATTCATCATCGTCTGCTTGCCATCTGTAG
ttttgcttt CT-rich tract
atttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tctctttgactttctgaaactatctcttatatagtaagttgagttcttgtgctgctttgtgtttgtagtatgttctcatatggattttgctttgtgttagGTTTGATTGGCATGTGGTGCAATTCATCATCGTCTGCTTGCCATCTGTAG
-ctctttg
- - - - - - - -gaaacta
- - - - - - - - - - - - - - - - - - - - - - - - - -ctgcttt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgtttgt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gattttg