1 5' 3' | 2 5' 3' | 3 5' 3' |
...cttgtgctacactaggtcagaaacaatttttgtaagaaatatataaactaatttttgagaggttaaagacataactaaatattaaatattgaatgtgcagACAACAAGGCACAAGAGAACGTAGTGTTCATTCATGGGTTCTTATCATCATCCACGTTTTGGACGGAGACTCTGTTCCCAAACTTCTCAGACTCAGCCAA
species | Arabidopsis thaliana |
transcript | AT1G64670.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: GCTTTCCTCTTCCAACCAATCTCTCTTTGTCAATGTCCAACAGCCCACAG ACAACAAGGCACAAGAGAACGTAGTGTTEST: gi|164080147|gb|ES064756.1|ES064756
genomic: GCTTTCCTCTTCCAACCAATCTCTCTTTGTCAATGTCCAACAGCCCACAGgtacatatat ... gaatgtgcagACAACAAGGCACAAGAGAACGTAGTGTT
EST: GCTTTCCTCTTCCAACCAATCTCTCTTTGTCAATGTCCAACAGCCCACAG ACAACAAGGCACAAGAGAACGTAGTGTTEST: gi|164057248|gb|ES044308.1|ES044308
genomic: GCTTTCCTCTTCCAACCAATCTCTCTTTGTCAATGTCCAACAGCCCACAGgtacatatat ... gaatgtgcagACAACAAGGCACAAGAGAACGTAGTGTT
EST: TTCCAACCAATCTCTCTTTGTCAATGTCCAACAGCCCACAG ACAACAAGGCACAAGAGAACGTAGTGTTCATTCATGGGTTCTTATCATCATEST: gi|86030520|gb|DR326273.1|DR326273
genomic: TTCCAACCAATCTCTCTTTGTCAATGTCCAACAGCCCACAGgtacatatat ... gaatgtgcagACAACAAGGCACAAGAGAACGTAGTGTTCATTCATGGGTTCTTATCATCAT
EST: GCTTTCCTCTTC-AACCAATCTCTCTTTGTCAATGTCCAACAGCCCACAG ACAACAAGGCACAAGAGAACGTAGTGCTCATTCATGGGTTCTTATCATCATEST: gi|19879190|gb|AU240021.1|AU240021
genomic: GCTTTCCTCTTCCAACCAATCTCTCTTTGTCAATGTCCAACAGCCCACAGgtacatatat ... gaatgtgcagACAACAAGGCACAAGAGAACGTAGTGTTCATTCATGGGTTCTTATCATCAT
EST: GCTTTCCTCTTCCAACCAATCTCTCTTTGTCAATGTCCAACAGCCCACAG ACAACAAGGCACAAGAGAACGTAGTGTTCATTCATGGGTTCTTATCATCAT
genomic: GCTTTCCTCTTCCAACCAATCTCTCTTTGTCAATGTCCAACAGCCCACAGgtacatatat ... gaatgtgcagACAACAAGGCACAAGAGAACGTAGTGTTCATTCATGGGTTCTTATCATCAT
aactaatttttgagaggttaaagacataactaaatattaaatattgaatgtgcagACAACAAGGCACAAGAGAACGTAGTGTTCATTCATGGGTTCTTATCATCATCCACGTTTTGGACGGAGACTCTGTTCCCAAACTTCTCAGACTCAGCCAA
aactaaa putative branch site (score: 2)
ttaaagacataactaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| cttgtgctacactaggtcagaaacaatttttgtaagaaatatataaactaatttttgagaggttaaagacataactaaatattaaatattgaatgtgcagACAACAAGGCACAAGAGAACGTAGTGTTCATTCATGGGTTCTTATCATCATCCACGTTTTGGACGGAGACTCTGTTCCCAAACTTCTCAGACTCAGCCAA
- - - - acactag
- - - - - - - - -cagaaac
- - - - - - - - - - - - - - - - taagaaa
- - - - - - - - - - - - - - - - - - - - - - aaactaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaagaca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aactaaa