1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
gtgtgtaaaaactttaaactttctttaattttccgtcgtgtttatgatttgagagattctctgttgtagGATGTTGAATCTGCTGTGAAAGTTCTTGAAGGTTTAGAAGGCATTCAAAATCCT
species | Arabidopsis thaliana |
transcript | AT1G51110.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: TGATCGGAATTCAAGGCCGTGGCAAATCTGCTTCTCCTAAACAGCTCAAT GATGTTGAATCTGCTGTGAAAGTTCTTGAAGGTTTAGAAGGCATTCAAAATEST: gi|124908324|gb|EH982404.1|EH982404
genomic: TGATCGGAATTCAAGGCCGTGGCAAATCTGCTTCTCCTAAACAGCTCAATgtgtgtaaaa ... tctgttgtagGATGTTGAATCTGCTGTGAAAGTTCTTGAAGGTTTAGAAGGCATTCAAAAT
EST: CTCCTAAACAGCTCAAT GATGTTGAATCTGCTGTGAAAGTTCTTGAAGGTTTAGAAGGCATTCAAAAT
genomic: CTCCTAAACAGCTCAATgtgtgtaaaa ... tctgttgtagGATGTTGAATCTGCTGTGAAAGTTCTTGAAGGTTTAGAAGGCATTCAAAAT
taaactttctttaattttccgtcgtgtttatgatttgagagattctctgttgtagGATGTTGAATCTGCTGTGAAAGTTCTTGAAGGTTTAGAAGGCATTCAAAATCCT
ctttaat putative branch site (score: 4)
ttctctgtt putative PPT
tttctttaatttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgtgtaaaaactttaaactttctttaattttccgtcgtgtttatgatttgagagattctctgttgtagGATGTTGAATCTGCTGTGAAAGTTCTTGAAGGTTTAGAAGGCATTCAAAATCCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG