ERISdb: a Database of Plant Splice Sites



Select a species and type of splice site




OR, alternatively, select a gene name


 atgc   highly conserved terminal intronic nucleotides at 5' or 3' end.

 atgc   branch site.


#1
gene: Vv00s0299g00030, transcript: Vv00s0299g00030.t01
Orthologs: AT2G39810 GLYMA11G03840 GLYMA01G41590 LOC_Os03g52700 PP1S274_80V6 PP1S51_66V6 SELMODRAFT_81560 SELMODRAFT_88092 GRMZM2G312738 GRMZM2G078736 AC190915.3_FG007 GRMZM2G473172
GGTTTCTTTGATTTGCCATTgtatccctttgttgttcctttagttgtcttcattagatgttttggcatat ... agatttctttatattagaagtctacattttccttaacagaagatgaacagATGTTACAGATGTTTGTATG

#2
gene: Vv00s0299g00030, transcript: Vv00s0299g00030.t01
Orthologs: AT2G39810 GLYMA11G03840 GLYMA01G41590 LOC_Os03g52700 PP1S274_80V6 PP1S51_66V6 SELMODRAFT_81560 SELMODRAFT_88092 GRMZM2G312738 GRMZM2G078736 AC190915.3_FG007 GRMZM2G473172
AACAGAACTTCAAGGGATTTgtatcctttcaatttcttaatttgttgttgctggggcttattgttaattt ... cgttttttattttcctagttggagtgtcaagcccttaacatttccaatagACAATCTTGAAGTAGAAGAG

#3
gene: Vv00s0299g00030, transcript: Vv00s0299g00030.t01
Orthologs: AT2G39810 GLYMA11G03840 GLYMA01G41590 LOC_Os03g52700 PP1S274_80V6 PP1S51_66V6 SELMODRAFT_81560 SELMODRAFT_88092 GRMZM2G312738 GRMZM2G078736 AC190915.3_FG007 GRMZM2G473172
TGGTTGCGAAACAAGCAATTgtatcctttgtccttttaagattttggatgcttttggtgatgatacatattctctgtaatgtagagtgttctttctttggttacttaacataggcacagTTTCTGTATTACTTGTTTGA